G1569467 (LOC106588954)


Basic Information

Item Value
gene id G1569467
gene name LOC106588954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60740239 ~ 60741809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1795726
aatcagcaggggatcaaatactttttcccctcactgtaagTGTTTCAAGTCTTGTTCGAATAGCCCAATTTCAACCTACTTTGAACAGTCTCCAAACAGAGAGACGGACACTGGTGAgtagaacacatacagtatcctAGCATGACAGGGTCCTCTTAACTCCCTTTCACATAAACAACAAGATGGGGCTTGTATAGTTAAGTCTCATATAATAGAAAGCTTTGGGACTTATTCAGCTATCTCAAAGGGTTATCTTTGAATTACAAAACCCCAGATTAACCACACATAGAAAAGAGTAATCATTCAGACCTCTAAATGAATCGTTTTAATGTACTAAACTTTTTTATCTTATTTTAAGGACAACACAATTCAGTTATTTGTTGTGGTCTACATGTAAAAAAAAGCAACAGTCCTGTTCAAATCTATGCCGATCCCACTGAATTCAAAAACAAAACTCCCATGATGCCTGCCATTGATCCTCTTTGAAACCAGTCTTTTAGATCTGACACCACTAGACAATCCTGGAATGTTCCTTCAAGCTTTCTTATTGTTTTTAAGCTCCCATAGTGACAGGAAGGAAAGATCAACAAAACTAGGGCATTCTGACAGACGTGCATAAATACTGTCACCTCTGGTGTGGACCCCACTTGGTTTGCAAAGGCACTTTAAATGAGGAAGTCTTCCCACAGGGAACAAGTAGGTAGTTTGCTGAGAGGCTTTGCTGGGACCCCTCTTTAAAAATCCTGCCTCTCAATCGTCCACCATGGAACTGTAATTGCACTTAGGTCAAAGGtcaattagggttagggtgaagCTAGTTCCCCCCGTTCTCAAACTTCCAGCGCTGGTGCTTGTCCCCGGGGGTGCACGTCCTCATCTGGACGTCCGCTCGCCCCTCGGCTGTGCGGCAGGAGGTGACACACATGTCTGAGTGAGGGTGGTATATGGTCCCGTCCTCTCTGAACTCCCAGATGATGGTGGGGGGTGTAGGGGTTCTGTCGTGGGGGCAGTGTTTCATCCCAATGTaactctgtccctctgggacctCGGCACACAGCTCCGTCACAGAGTTATAGCGGATCTCCTTATGAGTCGTGTACTCAAAGTACTAGGGGAAAGAGAGATGCATGGTTAAACTCTGCTGATCTGAATTATAGTAACCATCGTACCTGGGGAATGGATGAATGTTTACTCTCGGTGCTTCTACTTATCAAATCAGCAGCTCCAAACATTAGCATTCAACAGTTAAGAGATTTCACCAAAATAATCGCTTACTTTTAAGAGAGAAATGGTTGGATCTAGGTCTAAAGTAATGTCTGTTGAGCAagcaggg

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1795726 True 1333 lncRNA 0.44 3 60740239 60741809

Neighbor

gene id symbol gene type direction distance location
c18h18orf21 cssa27h18orf21 coding downstream 69669 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 98085 60610487 ~ 60642154 (-)
LOC110496650 elmo1 coding downstream 136321 60425049 ~ 60603918 (-)
LOC110496648 NA coding downstream 365368 60372518 ~ 60374871 (-)
LOC110496644 LOC106588945 coding downstream 485515 60201948 ~ 60254724 (-)
elp2 elp2 coding upstream 525472 61267281 ~ 61323861 (-)
LOC110496657 LOC106588974 coding upstream 737219 61479028 ~ 61493313 (-)
LOC110496659 LOC106588970 coding upstream 803850 61545659 ~ 61587847 (-)
LOC110496662 LOC106588967 coding upstream 948242 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 1055203 61797012 ~ 61828577 (-)
G1569430 LOC106588954 non-coding downstream 12023 60725409 ~ 60728216 (-)
G1569410 NA non-coding downstream 108288 60625780 ~ 60631951 (-)
G1569338 NA non-coding downstream 257159 60481739 ~ 60483080 (-)
G1569333 NA non-coding downstream 265121 60474755 ~ 60475118 (-)
G1569466 LOC100846954 non-coding upstream 237 60742046 ~ 60743190 (-)
G1569465 NA non-coding upstream 1536 60743345 ~ 60744221 (-)
G1569475 NA non-coding upstream 11683 60753492 ~ 60755163 (-)
G1569476 NA non-coding upstream 26680 60768489 ~ 60769195 (-)
G1569484 NA non-coding upstream 30437 60772246 ~ 60772482 (-)
G1569439 NA other downstream 46140 60693378 ~ 60694099 (-)
G1569277 NA other downstream 351147 60379853 ~ 60389092 (-)
G1569258 NA other downstream 389480 60348776 ~ 60350759 (-)
G1569198 NA other downstream 488870 60241931 ~ 60251369 (-)
G1570468 NA other upstream 549495 61291304 ~ 61293151 (-)
G1570695 NA other upstream 923519 61665328 ~ 61665910 (-)
G1572487 NA other upstream 2693989 63435798 ~ 63491169 (-)
G1573054 NA other upstream 3271970 64013779 ~ 64014965 (-)

Expression


Co-expression Network