Gene
RNA
| Item | Value |
|---|---|
| gene id | G1569466 |
| gene name | LOC100846954 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 60742046 ~ 60743190 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1795725 | True | 1145 | lncRNA | 0.48 | 1 | 60742046 | 60743190 |
60,739,200
60,739,600
60,740,000
60,740,400
60,740,800
60,741,200
60,741,600
60,742,000
60,742,400
60,742,400
60,742,800
60,743,200
60,743,600
60,744,000
60,744,400
60,744,800
60,745,200
60,745,600
NC_048582.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| c18h18orf21 | cssa27h18orf21 | coding | downstream | 71476 | 60645610 ~ 60670570 (-) |
| LOC110496651 | NA | coding | downstream | 99892 | 60610487 ~ 60642154 (-) |
| LOC110496650 | elmo1 | coding | downstream | 138128 | 60425049 ~ 60603918 (-) |
| LOC110496648 | NA | coding | downstream | 367175 | 60372518 ~ 60374871 (-) |
| LOC110496644 | LOC106588945 | coding | downstream | 487322 | 60201948 ~ 60254724 (-) |
| elp2 | elp2 | coding | upstream | 524091 | 61267281 ~ 61323861 (-) |
| LOC110496657 | LOC106588974 | coding | upstream | 735838 | 61479028 ~ 61493313 (-) |
| LOC110496659 | LOC106588970 | coding | upstream | 802469 | 61545659 ~ 61587847 (-) |
| LOC110496662 | LOC106588967 | coding | upstream | 946861 | 61690051 ~ 61708402 (-) |
| hsf1a | hsf1a | coding | upstream | 1053822 | 61797012 ~ 61828577 (-) |
| G1569467 | LOC106588954 | non-coding | downstream | 237 | 60740239 ~ 60741809 (-) |
| G1569430 | LOC106588954 | non-coding | downstream | 13830 | 60725409 ~ 60728216 (-) |
| G1569410 | NA | non-coding | downstream | 110095 | 60625780 ~ 60631951 (-) |
| G1569338 | NA | non-coding | downstream | 258966 | 60481739 ~ 60483080 (-) |
| G1569465 | NA | non-coding | upstream | 155 | 60743345 ~ 60744221 (-) |
| G1569475 | NA | non-coding | upstream | 10302 | 60753492 ~ 60755163 (-) |
| G1569476 | NA | non-coding | upstream | 25299 | 60768489 ~ 60769195 (-) |
| G1569484 | NA | non-coding | upstream | 29056 | 60772246 ~ 60772482 (-) |
| G1569933 | NA | non-coding | upstream | 354047 | 61097237 ~ 61102091 (-) |
| G1569439 | NA | other | downstream | 47947 | 60693378 ~ 60694099 (-) |
| G1569277 | NA | other | downstream | 352954 | 60379853 ~ 60389092 (-) |
| G1569258 | NA | other | downstream | 391287 | 60348776 ~ 60350759 (-) |
| G1569198 | NA | other | downstream | 490677 | 60241931 ~ 60251369 (-) |
| G1570468 | NA | other | upstream | 548114 | 61291304 ~ 61293151 (-) |
| G1570695 | NA | other | upstream | 922138 | 61665328 ~ 61665910 (-) |
| G1572487 | NA | other | upstream | 2692608 | 63435798 ~ 63491169 (-) |
| G1573054 | NA | other | upstream | 3270589 | 64013779 ~ 64014965 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G84265 | NA | non-coding | CI01000013 | null | 10186533 ~ 10187657 (+) |
| striped catfish (Pangasianodon hypophthalmus) | G115799 | LOC100846954 | non-coding | NC_047601.1 | CM018547.1 | 15914764 ~ 15917828 (+) |
| bowfin (Amia calva) | G109523 | LOC100846954 | non-coding | CM030134.1 | CM030134.1 | 3909961 ~ 3911048 (+) |
| mexican tetra (Astyanax mexicanus) | G101207 | NA | non-coding | NC_035908.1 | CM008311.1 | 5465950 ~ 5466415 (+) |
