G1569933


Basic Information

Item Value
gene id G1569933
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61097237 ~ 61102091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1796237
gtatttactgtagtgtttttgcataAATTACCATAATATTGAGTGTTTTTGTTTGATTATGTTTGACATAGAAATGGAGTCGTTCTCCTTCAGGAAACTTActggaaaaatacaaaaaaaatgaatcttccataacctgtaggtaggtaaataggtaggtaaataggtaggtaggaaAATAGGTAGGTAGggaaataggtaggtaggtaaataggtaggtagataggtaggtaggtgggtaggtaggtatgtatgtaaatatgtaggtaggtaaatatgtaGGTTGGTAAATAGGTAGgtcggtaggtaggtaggtaaataggtaggttggtaaataggtaggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaaataggtaggtaggtaaataggtaggtaggtaggtaaatatgtaggtaggtaggtaaataggtaggtaggtaggtaagtaggtaggtaggtaaataggtaaataggtaggtaaataggtaggtaggtaggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtatgtaggtaaataggtaggtaggtaaataggtaggtaggtaggttggtaAATAGGTAGGTATGTAGGTAAATATGTAGGTAAGTAAATAGGT
>TU1796239
gtatttactgtagtgtttttgcataAATTACCATAATATTGAGTGTTTTTGTTTGATTATGTTTGACATAGAAATGGAGTCGTTCTCCTTCAGGAAACTTActggaaaaatacaaaaaaaatgaatcttccataacctgtaggtaggtaaataggtaggtaaataggtaggtaggaaAATAGGTAGGTAGggaaataggtaggtaggtaaataggtaggtagataggtaggtaggtgggtaggtaggtatgtatgtaaatatgtaggtaggtaaatatgtaGGTTGGTAAATAGGTAGgtcggtaggtaggtaggtaaataggtaggttggtaaataggtaggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaaataggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtatgtaggtaaataggtaggtaggtaaataggtaggtaggtaggttggtaAATAGGTAGGTATGTAGGTAAATATGTAGGTAAGTAAATAGGT
>TU1796238
gtatttactgtagtgtttttgcataAATTACCATAATATTGAGTGTTTTTGTTTGATTATGTTTGACATAGAAATGGAGTCGTTCTCCTTCAGGAAACTTActggaaaaatacaaaaaaaatgaatcttccataacctgtaggtaggtaaataggtaggtaaataggtaggtaggaaAATAGGTAGGTAGggaaataggtaggtaggtaaataggtaggtagataggtaggtaggtgggtaggtaggtatgtatgtaaatatgtaggtaggtaaatatgtaGGTTGGTAAATAGGTAGgtcggtaggtaggtaggtaaataggtaggttggtaaataggtaggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaaataggtaggtaggtaggtaggtaggtaggtaggtaggtaggtgggtaggtaggtaggtatgtaggtaaatatgtaggtaggtaaataggtaggtaggtaaataggtaggtaggaagg

Function

NR:

description
LOC797832 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1796237 False 668 lncRNA 0.36 5 61097237 61102091
TU1796239 False 568 lncRNA 0.35 3 61097237 61102091
TU1796238 True 535 lncRNA 0.37 2 61099292 61102091

Neighbor

gene id symbol gene type direction distance location
c18h18orf21 cssa27h18orf21 coding downstream 426667 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 455083 60610487 ~ 60642154 (-)
LOC110496650 elmo1 coding downstream 493319 60425049 ~ 60603918 (-)
LOC110496648 NA coding downstream 722366 60372518 ~ 60374871 (-)
LOC110496644 LOC106588945 coding downstream 842513 60201948 ~ 60254724 (-)
elp2 elp2 coding upstream 165190 61267281 ~ 61323861 (-)
LOC110496657 LOC106588974 coding upstream 376937 61479028 ~ 61493313 (-)
LOC110496659 LOC106588970 coding upstream 443568 61545659 ~ 61587847 (-)
LOC110496662 LOC106588967 coding upstream 587960 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 694921 61797012 ~ 61828577 (-)
G1569484 NA non-coding downstream 324755 60772246 ~ 60772482 (-)
G1569476 NA non-coding downstream 328042 60768489 ~ 60769195 (-)
G1569475 NA non-coding downstream 342074 60753492 ~ 60755163 (-)
G1569465 NA non-coding downstream 353016 60743345 ~ 60744221 (-)
G1569466 LOC100846954 non-coding downstream 354047 60742046 ~ 60743190 (-)
G1570016 NA non-coding upstream 152225 61254316 ~ 61257570 (-)
G1570633 NA non-coding upstream 424423 61526514 ~ 61526841 (-)
G1570649 NA non-coding upstream 486055 61588146 ~ 61588404 (-)
G1570657 NA non-coding upstream 501171 61603262 ~ 61603611 (-)
G1570661 NA non-coding upstream 506808 61608899 ~ 61609236 (-)
G1569439 NA other downstream 403138 60693378 ~ 60694099 (-)
G1569277 NA other downstream 708145 60379853 ~ 60389092 (-)
G1569258 NA other downstream 746478 60348776 ~ 60350759 (-)
G1569198 NA other downstream 845868 60241931 ~ 60251369 (-)
G1570468 NA other upstream 189213 61291304 ~ 61293151 (-)
G1570695 NA other upstream 563237 61665328 ~ 61665910 (-)
G1572487 NA other upstream 2333707 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2911688 64013779 ~ 64014965 (-)

Expression


Co-expression Network