G1570696


Basic Information

Item Value
gene id G1570696
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61665974 ~ 61667052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1797095
CTCGATGAAGCTGTTCAGGGTGGAGTTGGTGGGGTTGTGCGTGATGAGTAGTCGCATGTTCTTGTAGCACACCTCGGCAGGCGCCGGACGGTTCATACGGGCCATGTTGACAACCGTTACCCAGCTGGGGGTGCGAATGCAACACGGACAGGGACGCACAGGGGACACAAAGTGGTGGACCACGGACGCCACGGTAACTGGTGGGCTGAACTCCTCCGAAAACTCCTCTTCAATCCTCTTCTCAGTCCTTTCCCTCCTTTGAAAAGATCCGCCCTCGGGTTGGTCGATCCTCTGGGGTCACTGTGGTTGGTTTAGATGAGGAAGAGCATAGCCATGGGCTTGGGGCTTTCACTGAAGAGTAGTGGAATAGTTAGTCCAATCACCCCATTAGAGTTCCTGAGAGAGGGTCTTACGGTGAGAGATCTAAGGGGGTGGAGAGTCCTGGGAGGCAGGGAGCCCTTCAGTGCAGGTTAGTAGGCTGAGAAGGCAAAGCAGTGGGCATCCTCCCCTGGATCAGTCTATGCTCTGGGATGTTGCGCGTGGCAGTAGTCTCCAGTCTTCTGCAAGAACGCCATCAAAAGCACAGCGCCAAGGATGTAAAACTGTGTGAAAGGGGAAGGGGCAAAGGAAGACAGAAGAGAGTTATCGCTGACAAATCTGAGACATTGGCTGCCTCCCGGTGAAGGACAATGGTGtttccctgctttctctcattCCCCCAACTAGCACTATGTAAATATACTGATTGATGATGTGCAACATCAAATAATGGTCTAATGTTTCAATGAGCAACAAGGGCATTCATTTCACCTCCAGTCACTGTTTTTATTTCCCTAACTAATTTGATACATTAGATATGCTGGAAAGCAACATAACAAGCATgccaattatttaaaaaaatatcacaTAAAACTGACTTTATCATCTGCTCTACCAAC
>TU1797094
CTCGATGAAGCTGTTCAGGGTGGAGTTGGTGGGGTTGTGCGTGATGAGTAGTCGCATGTTCTTGTAGCACACCTCGGCAGGCGCCGGACGGTTCATACGGGCCATGTTGACAACCGTTACCCAGCTGGGGGTGCGAATGCAACACGGACAGGGACGCACAGGGGACACAAAGTGGTGGACCACGGACGCCACGGTAACTGGTGGGCTGAACTCCTCCGAAAACTCCTCTTCAATCCTCTTCTCAGTCCTTTCCCTCCTTTGAAAAGATCCGCCCTCGGGTTGGTCGATCCTCTGGGGTCACTGTGGTTGGTTTAGATGAGGAAGAGCATAGCCATGGGCTTGGGGCTTTCACTGAAGAGTAGTGGAATAGTTAGTCCAATCACCCCATTAGAGTTCCTGAGAGAGGGTCTTACGGTGAGAGATCTAAGGGGGTGGAGAGTCCTGGGAGGCAGGGAGCCCTTCAGTGCAGGTTAGTAGGCTGAGAAGGCAAAGCAGTGGGCATCCTCCCCTGGATCAGTCTATGCTCTGGGATGTTGCGCGTGGCAGTAGTCTCCAGTCTTCTGCAAGAACGCCATCAAAAGCACAGCGCCAAGGATGTAAA
>TU1797096
gagagagagagaacagagagagagagagaacagagagagagagagaacagggagagagagaacaaagagggaagatgagagagagataaaggtgaGAAAAGaaccagggagaaagagagggttggATAGAGCAGTCCTCACCTCGATGAAGCTGTTCAGGGTGGAGTTGGTGGGGTTGTGCGTGATGAGTAGTCGCATGTTCTTGTAGCACACCTCGGCAGGCGCCGGACGGTTCATACGGGCCATGTTGACAACCGTTACCCAGCTGGGGGTGCGAATGCAACACGGACAGGGACGCACAGGGGACACAAAGTGGTGGACCACGGACGCCACGGTAACTGGTGGGCTGAACTCCTCCGAAAACTCCTCTTCAATCCTCTTCTCAGTCCTTTCCCTCCTTTGAAAAGATCCGCCCTCGGGTTGGTCGATCCTCTGGGGTCACTGTGGTTGGTTTAGATGAGGAAGAGCATAGCCATGGGCTTGGGGCTTTCACTGAAGAGTAGTGGAATAGTTAGTCCAATCACCCCATTAGAGTTCCTGAGAGAGGGTCTTACGGTGAGAGATCTAAGGGGGTGGAGAGTCCTGGGAGGCAGGGAGCCCTTCAGTGCAGGTTAGTAGGCTGAGAAGGCAAAGCAGTGGGCATCCTCCCCTGGATCAGTCTATGCTCTGGGATGTTGCGCGTGGCAGTAGTCTCCAGTCTTCTGCAAGAACGCCATCAAAAGCACAGCGCCAAGGATGTAAA

Function

NR:

description
protein tyrosine phosphatase type IVA 3-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1797095 False 938 lncRNA 0.49 1 61665974 61666911
TU1797094 False 601 lncRNA 0.55 1 61666311 61666911
TU1797096 True 742 lncRNA 0.54 1 61666311 61667052

Neighbor

gene id symbol gene type direction distance location
LOC110496659 LOC106588970 coding downstream 78127 61545659 ~ 61587847 (-)
LOC110496657 LOC106588974 coding downstream 172661 61479028 ~ 61493313 (-)
elp2 elp2 coding downstream 342113 61267281 ~ 61323861 (-)
c18h18orf21 cssa27h18orf21 coding downstream 995404 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 1023820 60610487 ~ 60642154 (-)
LOC110496662 LOC106588967 coding upstream 22999 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 129960 61797012 ~ 61828577 (-)
LOC110496666 LOC106588964 coding upstream 192667 61859719 ~ 61867675 (-)
LOC110496668 brp16 coding upstream 290901 61957953 ~ 61968581 (-)
LOC118941000 NA coding upstream 351364 62018416 ~ 62035927 (-)
G1570695 NA non-coding downstream 395 61665328 ~ 61665910 (-)
G1570692 NA non-coding downstream 3313 61662455 ~ 61662661 (-)
G1570688 NA non-coding downstream 9485 61656224 ~ 61656489 (-)
G1570687 NA non-coding downstream 13987 61651687 ~ 61651987 (-)
G1570671 NA non-coding downstream 41399 61624356 ~ 61624575 (-)
G1570697 NA non-coding upstream 2751 61669803 ~ 61670018 (-)
G1570699 NA non-coding upstream 6649 61673701 ~ 61673951 (-)
G1570712 NA non-coding upstream 10672 61677724 ~ 61678130 (-)
G1570772 NA non-coding upstream 124961 61792013 ~ 61792306 (-)
G1570704 NA non-coding upstream 128344 61795396 ~ 61795820 (-)
G1570468 NA other downstream 372823 61291304 ~ 61293151 (-)
G1569439 NA other downstream 971875 60693378 ~ 60694099 (-)
G1572487 NA other upstream 1768746 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2346727 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2515906 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3303239 64970291 ~ 64971167 (-)
G1575088 NA other upstream 3642991 65310043 ~ 65311051 (-)

Expression


Co-expression Network