G1570892


Basic Information

Item Value
gene id G1570892
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 62005193 ~ 62007161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1797313
TGTTGTACCCCTGCAGTAATGAATCCCTGTATTGCTGTTCCTCGTGTAAGTGAACAAAGCTCTTTGGTGCACATTACTCTTTGTCACGCTAAATGTGTGTAATCATTGACTAGACTTGACTCGCACAGTAAGTTCACAGTATATCAGCTTTCCAGTGAACGCCCTGACTGTCAGACCCTGACCTATTTTTAATCTCTTCCTTACAGGTTGTATGATGACCTGGGTTGTCTATCTTACCTCTTGAGCGCTGGTTTGGTTCTGGAAAGGCTTTCTCTGTGTCCTCACTGTGCTCACTTTCAACCTTTTAGGATCAGAATTTTACAGAAGTATAACATCGGAATTACAGCAGGCGTGAACAAGTTAGTGGAGGACAAGGTGTTCAGAGACACGGATAGTAAAGACTTGAGACTACATACTGTGTCAGGTACATCTCCAGGACTTTACCATGGTCACAGTGATGGGGCTCAGACTCCTCCTGGAAACACAATGGCACAATGTATCTGTCTGGGCCCGGAACATCACAACAAAGAACATGTACAGTAATTTTTCaaaaactgtttacagacagattatttcacatataattcattgtatcacaattccagtgggtcagacgtttacatacactaagttgactgtgcc
>TU1797314
TGTTGTACCCCTGCAGTAATGAATCCCTGTATTGCTGTTCCTCGTGTAAGTGAACAAAGCTCTTTGGTGCACATTACTCTTTGTCACGCTAAATGTGTGTAATCATTGACTAGACTTGACTCGCACAGTAAGTTCACAGTATATCAGCTTTCCAGTGAACGCCCTGACTGTCAGACCCTGACCTATTTTTAATCTCTTCCTTACAGGTTGTATGATGACCTGGGTTGTCTATCTTACCTCTTGAGCGCTGGTTTGGTTCTGGAAAGGCTTTCTCTGTGTCCTCACTGTGCTCACTTTCAACCTTTTAGGATCAGAATTTTACAGAAGTATAACATCGGAATTACAGCAGGCGTGAACAAGTTAGTGGAGGACAAGGTGTTCAGAGACACGGATAGTAAAGACTTGAGACTACATACTGTGTCAGGTAAAAACACAGCTTTACTAGGATACTGGCTGTTCAGTCATGGACCTCTGACTCAGATCTCCAAGAGAGCAGATAGAGGGTTTAGAACGTCACAGGTGTGTCTGTGAATAGGTGGTACAGAACCTACCAGGTGTGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACATACTAGGTCAGTCTGTGAATAAGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTGCAGAACCTACCAGGTCAGTCTGTGAATAGATGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAGGTGGTACAGAACCTACCAGGTCAGTCTGTGAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1797313 False 642 lncRNA 0.43 2 62005193 62007161
TU1797314 True 921 lncRNA 0.45 2 62005716 62007161

Neighbor

gene id symbol gene type direction distance location
LOC110496668 brp16 coding downstream 36612 61957953 ~ 61968581 (-)
LOC110496666 LOC106588964 coding downstream 137518 61859719 ~ 61867675 (-)
hsf1a hsf1a coding downstream 176616 61797012 ~ 61828577 (-)
LOC110496662 LOC106588967 coding downstream 296791 61690051 ~ 61708402 (-)
LOC110496659 LOC106588970 coding downstream 417346 61545659 ~ 61587847 (-)
LOC118941000 NA coding upstream 11255 62018416 ~ 62035927 (-)
LOC118941001 NA coding upstream 36199 62043360 ~ 62098767 (-)
zgc:63863 LOC106588987 coding upstream 377517 62384678 ~ 62407274 (-)
cfap20 cfap20 coding upstream 428654 62435815 ~ 62441111 (-)
LOC110496675 LOC106570403 coding upstream 864827 62871988 ~ 62875096 (-)
G1570845 LOC100846954 non-coding downstream 71421 61933507 ~ 61933772 (-)
G1570844 NA non-coding downstream 71856 61933133 ~ 61933337 (-)
G1570839 NA non-coding downstream 81418 61923439 ~ 61923775 (-)
G1570704 NA non-coding downstream 209373 61795396 ~ 61795820 (-)
G1570900 NA non-coding upstream 10236 62017397 ~ 62017820 (-)
G1570912 NA non-coding upstream 51875 62059036 ~ 62059531 (-)
G1570924 NA non-coding upstream 72255 62079416 ~ 62079666 (-)
G1570962 NA non-coding upstream 78227 62085388 ~ 62086276 (-)
G1570963 NA non-coding upstream 81631 62088792 ~ 62089007 (-)
G1570695 NA other downstream 339283 61665328 ~ 61665910 (-)
elp2 elp2 other downstream 681372 61267281 ~ 61323861 (-)
G1570468 NA other downstream 712042 61291304 ~ 61293151 (-)
G1569439 NA other downstream 1311094 60693378 ~ 60694099 (-)
LOC110496651 NA other downstream 1388901 60610487 ~ 60642154 (-)
G1572487 NA other upstream 1428637 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2006618 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2175797 64017203 ~ 64244837 (-)
G1573887 NA other upstream 2963130 64970291 ~ 64971167 (-)
G1575088 NA other upstream 3302882 65310043 ~ 65311051 (-)

Expression


Co-expression Network