G1575168


Basic Information

Item Value
gene id G1575168
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65461921 ~ 65504693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1802217
gacaagtcagttaagaacaaattcttacttacaatgacggcctgccgcTGTCAAACCCGGACAGGGACAATTTTGCGTGGCCCTGTGGGTCTACCAATCACgaccggatgtgattcagcctggattcgaaccaggaactGTAGAGATGcgtcttgcactgagatgcagtgccttagaccactgcgccactcgggagcccattgaCAAGGCTTCACCATTGACTCATCATTTAATATAAACACGGCAACTTTTACAACATGGCCGTGCTCTTGTCTTTGTGATGTTGCCGTGAGAAGATTTACTCACCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCTCATCAAAGGAAGTGAGACAGGCACGAATTTGAGACAATTCCTTCCTATAGAAGGCTAGgaatgcatcctaaatggcaccctattccccatagggctctggtcaaaagtagtgcactatatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcactatatagggaatagggtgtcatttgggacacattctgtctccactGAACAGGAAGTGAGGCGATTGAGAAATGGAGGTAGATGAACGCAGTATAATTCTGACTGTCCTGTCAAAGAGGTTTCATATATACCAGATTTCAACGTCACGTTGCAAGGTCTTTGCACATACTGTTTCTGAGGTAGAACGATGATCAACTTCAACTGTGAGTTCTGTTACAGTGTTGGGTGCCATCACCAACAGAGATGGTGTTCTCTCTGGAAACAATGCAACTAaaaaacatacagtacaacaatttGACTGAAAATATGCAATAGTGCAGGAC
>TU1802219
gacaagtcagttaagaacaaattcttacttacaatgacggcctgccgcTGTCAAACCCGGACAGGGACAATTTTGCGTGGCCCTGTGGGTCTACCAATCACgaccggatgtgattcagcctggattcgaaccaggaactGTAGAGATGcgtcttgcactgagatgcagtgccttagaccactgcgccactcgggagcccattgaCAAGGCTTCACCATTGACTCATCATTTAATATAAACACGGCAACTTTTACAACATGGCCGTGCTCTTGTCTTTGTGATGTTGCCGTGAGAAGATTTACTCACCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCTCATCAAAGGAAGTGAGACAGGCACGAATTTGAGACAATTCCTTCCTATAGAAGGCTAGgaatgcatcctaaatggcaccctattccccatagggctctggtcaaaagtagtgcactatatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcactatatagggaatagggtgtcatttgggacacattctgtctccactGAACAGGAAGTGAGGCGATTGAGAAATGGAGGTAGATGAACGCAGTATAATTCTGACTGTCCTGTCAAAGAGGTTTCATATATACCAGATTTCAACGTCACGTTGCAAGGTCTTTGCACATACTGTTTCTGAGGTAGAACGATGATCAACTTCAACTGTGAGTTCTGTTACAGTGTTGGGTGCCATCACCAACAGAGATGGTGTTCTCTCTGGAAACAATGCAACTAaaaaacatacagtacaacaatttGACTGAAAATATGCAATAGTGCAGGAC
>TU1802216
gacaagtcagttaagaacaaattcttacttacaatgacggcctgccgcTGTCAAACCCGGACAGGGACAATTTTGCGTGGCCCTGTGGGTCTACCAATCACgaccggatgtgattcagcctggattcgaaccaggaactGTAGAGATGcgtcttgcactgagatgcagtgccttagaccactgcgccactcgggagcccattgaCAAGGCTTCACCATTGACTCATCATTTAATATAAACACGGCAACTTTTACAACATGGCCGTGCTCTTGTCTTTGTGATGTTGCCGTGAGAAGATTTACTCACCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCCCAGAGGAAGATTTACCCAGACCCTGTTTCACAAGATCCTCATCAAAGGAAGTGAGACAGGCACGAATTTGAGACAATTCCTTCCTATAGAAGGCTAGgaatgcatcctaaatggcaccctattccccatagggctctggtcaaaagtagtgcactatatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggttccatagggctctggtcaaaagtagtgcacaacatagggaatagggtgccatttaggatacaTACCCAGCCTCTTAAACTCATCGTCCTCCCTCCTGACCCAACTAACCATCACAATGACAGCAATTATAGCAGAACTTGTATCATATCTACCATGTGGAGACGGTGTGGTGTCAATAGCTGTGTCTGGGTTCTAGTGTTAGAGCACTGAGACACAGCTGAGACGTAGCTGAGACGTAGCTGAGATGTAGTGGTGGTGATTTCCTCATCAAAACAAAATGAGAGTACCGGTCCTGTagattctctgtctctgtcattcAGTAAGATAACATCCACAATGACAATAATACTTCAAAGTTGCAGTTATAATTATAAACAGTCCTcatgacataatttacaaactaataGTGTTTGACATCAGATCTTCTCCCGCGACTAGGGATGAAACTGAtttaagttaaggaaataaaatGCAGTAGAAAACACATCAACGTTGTGCTGATCAAAACAAAATAAAGCTTAGATTTGACCAGAGCAAAGCGTTGCCCGGCGATAGCAGACACTCACATAGCGGATGTTTCGGAGGTGTTGGAGGCGGAACTGCAGGAACTGCGTCggagctgtcaaatcggtgagcagctgctcttgcgaAGCCACATCAGCCCCACTCACTTTAGAATTTCAGAACGAGAAAACTGTAGGCTGTATAGAAATAATTACacagagtggcgcagcagtctaaggcattgcatctcagtgccagaggcgtcactacagaccctgcttcgattccaggctgtatcacaactcgCCGTGATAGGGAGTCACACAggccggcgcacaattggcccagcgtcgtcctggtttgctctagttaaataaattaaaatataaataatgaaggtttctatcatcctaatggaggtgtagataacatctatcatcctaacggAGGTGTAGATGACATCTCACATTTCCGTGTTCCAACAAGGCCACATGTGGATTTCTGTTAATGCGACTCCGTGCAAACAATGGCAATGTCCTCTTTAGATATAATGCCGGGAGCCGTTTGTGTATTTGACAGCCCTAACGCAGTTCCATCGTCAAAACAACCGCTATGCAGATGTTGGCTGAAGCTGATCTGATTCAATTTGACCACCTAGTCTATCTATCTGGCATGCACAccactactgtagctagctagacatGACGTGTCTGGTTTTTCAAAACGTTTCCTGCAGTCGGTTCATTTGGTCACACAGCAACATATTTACACCGTACAATTGTCTTCTTCCTTTATAAAGGAGAGTTCAAACGAATATGTCATTTTGTCATTTGAACTATAACTTTAAGTCTGCACTTTAGACAGACTGTTATAGGTGTGTCCATACATACTGTAGCAGCAaaaacacactgatataacaagTTCACCACAACTCACAGAGCAATGGTAACATAGACTGACTTCGCCTCATATTCCCCCAAAACCAAAACTCACATTAGGCCTAACTAAGGTCTGCCCCAGCTCAAATATTCTGGAAGGTACAATAGTTTCTACTTGATTTCCATTTCCCATTCATGTAATTCATAGAATAGGCGTAGGGTTCAAGTCTCCTGTTATCTTCCTGGTTGAGGCTCCATATTAAGTCCATTTGTAGTGCAGGAGTTCAACCGAGTTCCAGGGTTCTAATGAGGTGTTTGATTGGACAGACAGTCAGTTTCTGTTGAGTAGTATGATATGATTGGTTGAAAACAGAGTGAACAAGATTGGAGGAACAGTAATAGGATCCAGCTCAAGGATTTGTTTGGGTTGGTGGAGGTAAACGAGATAAGGGGTGATCTCCTTAAGGTGAGGGTGGACAGGGTCAAGGTGGCAGTCACGTTATAATGACATAATAACAGAATTAAACTGAATCGTCTACAGAGCCTCTACACTACAACTCCATAAACTACCGCCATTCAGTGAGCTTGTGGTTGTCATGGACAACAGGGTAGTCCCATAGCTGTAAACTGTACGGGACGGATCGGGATATGGCTCTAAGGTCATTCACAGTCATGAAACATCACGATTTCCCTTAAATATGCAATAATATAACATTAGGAGTACAGGATTGAACTAGAACTCTCCTGGTGGAAGCAAAACTCGTCCATTACTATGACCCACATGTAATCCCTGTCACCCATACAGACAGTATAGTGTATAACCTAATCGCTATCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1802217 False 1018 lncRNA 0.45 2 65461921 65504693
TU1802219 False 971 lncRNA 0.45 2 65461921 65504693
TU1802216 True 2930 lncRNA 0.44 2 65501734 65504693

Neighbor

gene id symbol gene type direction distance location
LOC110496698 LOC106570363 coding downstream 340865 65056656 ~ 65121056 (-)
LOC110496694 LOC106589019 coding downstream 473925 64973831 ~ 64987996 (-)
LOC110496691 LOC106589015 coding downstream 628598 64828329 ~ 64833323 (-)
LOC110496688 LOC106589014 coding downstream 692634 64766115 ~ 64769287 (-)
LOC110496684 kdm1b coding downstream 765917 64680203 ~ 64696004 (-)
LOC110496890 LOC106570358 coding upstream 10249 65514942 ~ 65601901 (-)
LOC110496703 NA coding upstream 106247 65610940 ~ 65620200 (-)
LOC110496706 LOC106589031 coding upstream 250428 65755121 ~ 65767988 (-)
xkr8.3 xkr8 coding upstream 266222 65770915 ~ 65781022 (-)
epb41a LOC106589039 coding upstream 390291 65894984 ~ 66039471 (-)
G1575152 NA non-coding downstream 24270 65436775 ~ 65437651 (-)
G1575110 NA non-coding downstream 109675 65351176 ~ 65352246 (-)
G1574998 NA non-coding downstream 314480 65145318 ~ 65147441 (-)
G1574995 NA non-coding downstream 318533 65143101 ~ 65143388 (-)
G1574976 NA non-coding downstream 354928 65105527 ~ 65106993 (-)
G1575232 NA non-coding upstream 98148 65602841 ~ 65603086 (-)
G1575278 NA non-coding upstream 176055 65680748 ~ 65689851 (-)
G1575289 LOC106589037 non-coding upstream 198683 65703376 ~ 65709595 (-)
G1575169 NA non-coding upstream 209075 65713768 ~ 65716640 (-)
G1575314 NA non-coding upstream 228998 65733691 ~ 65763466 (-)
G1575088 NA other downstream 150870 65310043 ~ 65311051 (-)
G1573887 NA other downstream 490754 64970291 ~ 64971167 (-)
LOC110496680 LOC106589004 other downstream 1217107 64017203 ~ 64244837 (-)
G1573054 NA other downstream 1446956 64013779 ~ 64014965 (-)
G1572487 NA other downstream 1970752 63435798 ~ 63491169 (-)
G1575282 NA other upstream 292937 65797630 ~ 65798675 (-)
G1575457 NA other upstream 509776 66014469 ~ 66053735 (-)
G1575475 NA other upstream 550989 66055682 ~ 66056239 (-)
ppp1r11 ppp1r11 other upstream 733405 66238098 ~ 66242725 (-)
G1575541 NA other upstream 796722 66301415 ~ 66305176 (-)

Expression


Co-expression Network