XLOC_003487


Basic Information

Item Value
gene id XLOC_003487
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25829370 ~ 25830337 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008616
GGAGCCTCCATGTTTAAACCTGGGCAGTTTAATCACAACAGATTCATAAATtgtttgtttgtgtctggTTCAGTCATTGAATCCCGGCCAAGAATGTGACTGACTCCCCGGGCTGGCTGTTCCAGGAGACGCGCCGCCTCCCCCCGCAGCCCGAGCAGCTGCAAAAGCGGGAACACAAACTACACGTAAAGGCGCTGCAGCAAGAGGAGGAGTCTACGTACACGGTCTATAGTAACTTTCATTAATAAACTTTAAAGCTTATACATATGAACAGCAGCGGATTACATACCTTTGAGTGGAACAACCGATAAGTCATTTAATCATTGATGTcagcttatgttttattttgatcgTCTTGCCAAAGTGTTTCAATATTTTACGCGGTGAAAATGAACACTCTTTCTTAATAGatacattgattttttttctaatataataattttcacacatttttatgcattttaaaaggaataactatatttgtatttttgttttaaattatttaagattttaaataaaatattactgttaaatatattaataaaatgactatttttgcattaataccttacatttaaattttagatattggaaataaatttattatatatgattttgcatttaaatatataataaatgttgtcttatttacatatttaaatgattttat

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0007049 cell cycle biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008616 True 670 lncRNA 0.32 2 25829370 25830337

Neighbor

gene id symbol gene type direction distance location
XLOC_003486 si:dkey-183j2.10 coding upstream 79310 25735478 ~ 25750060 (+)
XLOC_003485 mon1bb coding upstream 120059 25693395 ~ 25709311 (+)
XLOC_003484 otud5b coding upstream 139497 25681335 ~ 25689873 (+)
XLOC_003483 grm6b coding upstream 149649 25634041 ~ 25679721 (+)
XLOC_003482 comtb coding upstream 197928 25619892 ~ 25631442 (+)
XLOC_003488 CR318604.1 coding downstream 247610 26077947 ~ 26078061 (+)
XLOC_003489 NA coding downstream 358180 26188517 ~ 26196145 (+)
XLOC_003490 NA coding downstream 395745 26226082 ~ 26234069 (+)
XLOC_003491 ppcs coding downstream 533098 26363435 ~ 26369549 (+)
XLOC_003492 cpne1 coding downstream 545642 26375979 ~ 26401674 (+)
XLOC_003369 CR854846.2 misc upstream 9706288 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 13117374 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 13135107 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 13143771 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 13149342 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 563135 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 601175 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 769272 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 1248256 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1650432 24178823 ~ 24178938 (+)
XLOC_003497 NA non-coding downstream 872620 26702957 ~ 26709080 (+)
XLOC_003499 NA non-coding downstream 1376859 27207196 ~ 27208386 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G40442 NA non-coding NC_053115.1 CM020912.1 20265840 ~ 20266366 (+)