G1575289 (LOC106589037)


Basic Information

Item Value
gene id G1575289
gene name LOC106589037
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65703376 ~ 65709595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1802383
TGACGAGCCAGCAGGACTTTCCCAAAGCTCCCTTTGCCAATGATTTTCAGGTAGTCGAAATCACTTGGTTTGATCGCCAACTCCTCCGCTAGAGAGCTTCTGGGGAACGCCAGGCACATCGGATTCAGAAGTTCATCATCGTCCAGCTCTTCATTCTGGTTCTCATCGATCTTGAGGAAGTCAACTTCAGAGTGATGACAGATATGTGGGTTTGACACCAGCTTCGAGATTAAGTCATTCAGACCCATTTTCCTCTCCTTGATGAAAGCAGTGAGAACTGACACGATTCCCCTCATCTTGCAATAAGACAAGTCGCATGGAGCCTCGGTAACAGCCATAGTGAACAAGAAGATAAATCCACTTTGGAAAAGCAGCTGAAATAGAGACCTCCGTTATGGAGAAGACACGCTGGTTGCCCTAGAACCAATTGCTCCACTTCATGCGTACAGAGAGAGTCGTGCCCGCGGAAACGATCCGTCTTAAACACCCACCCAGT

Function

NR:

description
serine/threonine-protein kinase Sgk1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1802383 True 496 lncRNA 0.48 4 65703376 65709595

Neighbor

gene id symbol gene type direction distance location
LOC110496703 NA coding downstream 83176 65610940 ~ 65620200 (-)
LOC110496890 LOC106570358 coding downstream 101475 65514942 ~ 65601901 (-)
LOC110496698 LOC106570363 coding downstream 582320 65056656 ~ 65121056 (-)
LOC110496694 LOC106589019 coding downstream 715380 64973831 ~ 64987996 (-)
LOC110496691 LOC106589015 coding downstream 870053 64828329 ~ 64833323 (-)
LOC110496706 LOC106589031 coding upstream 45526 65755121 ~ 65767988 (-)
xkr8.3 xkr8 coding upstream 61320 65770915 ~ 65781022 (-)
epb41a LOC106589039 coding upstream 185389 65894984 ~ 66039471 (-)
LOC110496714 LOC106589042 coding upstream 342040 66051635 ~ 66068096 (-)
LOC118941206 NA coding upstream 370859 66080454 ~ 66094549 (-)
G1575278 NA non-coding downstream 13525 65680748 ~ 65689851 (-)
G1575232 NA non-coding downstream 100290 65602841 ~ 65603086 (-)
G1575168 NA non-coding downstream 198683 65461921 ~ 65504693 (-)
G1575188 NA non-coding downstream 211374 65490907 ~ 65492002 (-)
G1575152 NA non-coding downstream 265725 65436775 ~ 65437651 (-)
G1575169 NA non-coding upstream 4173 65713768 ~ 65716640 (-)
G1575314 NA non-coding upstream 24096 65733691 ~ 65763466 (-)
G1575318 NA non-coding upstream 31098 65740693 ~ 65742149 (-)
G1575320 NA non-coding upstream 34439 65744034 ~ 65744396 (-)
G1575332 NA non-coding upstream 58763 65768358 ~ 65768692 (-)
G1575088 NA other downstream 392325 65310043 ~ 65311051 (-)
G1573887 NA other downstream 732209 64970291 ~ 64971167 (-)
LOC110496680 LOC106589004 other downstream 1458562 64017203 ~ 64244837 (-)
G1573054 NA other downstream 1688411 64013779 ~ 64014965 (-)
G1572487 NA other downstream 2212207 63435798 ~ 63491169 (-)
G1575282 NA other upstream 88035 65797630 ~ 65798675 (-)
G1575457 NA other upstream 304874 66014469 ~ 66053735 (-)
G1575475 NA other upstream 346087 66055682 ~ 66056239 (-)
ppp1r11 ppp1r11 other upstream 528503 66238098 ~ 66242725 (-)
G1575541 NA other upstream 591820 66301415 ~ 66305176 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_11209592_11214961 NA coding CI01000054 null 11208049 ~ 11215113 (-)