G1575283 (LOC105008066)


Basic Information

Item Value
gene id G1575283
gene name LOC105008066
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65792444 ~ 65796646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1802377
TGATCAGACTGATCACCTTGCATCAAAAATAACTATGAGACTTGTAAATAATAATACTGATTTAGCTACCTGGAGCGGCTGCGAGAGTAAGAGCGCTTGCTGCGCTTGGCCCCGGGGCGGTCCTCAATCAGCCGGATCTTCCTGCCGTTCACCTCTGTGCCGTCCAGCTTCTCCAGGGCTCTCTTCATGTCAGAGTACAGCCTGAACTCTATCACTCCCTCGTTCCTGCGTCCTTTATTGGTGTCAGCATACGTCACCTCACCCGCCTGCCTCATGTAGTCCTGGTGAAGGAAGGGAAAGGGTTGGGATTTGGCCTTCAGGTCCTGCCAGCTGCAGCGACTGGACAGGTTCTCAACGATCAGCCGATAGTCTGTCCTTGCCGGTGGGCCATATCTGTCTCTGCCACCACGCCCATACCCGCCCCCGCCTTCAAAAGTAACAAGGATAGAGCAACAGCAATTAGGGCAAGGGGGCACACCGAGAGGACAGCCTCAACACTAATCTCCAAACTACATTATGTAAACAATGGCCACATAAACAATCTGGGAGAAATTTAAATAGATTACAGACGGGGGAAAGTAATGACAAAAACAAGCTAaccaaaaagaaagaaaaaaaagaaatgaaATCCTGTGTGTAGGCTACATTAATTAACCTAGAAACCTGCACATTTCCATCAGGAACACTGACATAATCTATTCCTCATCTAAACTACTAAATCGTTAACTGATGAGTCACGCTTGGGTAGAACTGAATACAAAACTCTacataaaaatttaaaaaatgaaaacctAAGATTAAAAATACTACATAAAACCTGACTGAAAACAGTACTTACGGTGACACTAATGTTTAAGTTAACTAAGCACATCTAAATATATAGACATTTCACATTTGTTTCAGGCACCTATAAGAGCTCAACCCACATCTGTTCCTAACCCAATGGCATCCTCACCACCCGGCCTGGGACTAATGGGACAAGCGGTCTTCATTCACATTGGCTCCCCTTTTTTGGTTCTGCCCAGGGGCCCAGAATGGTCAAACCACACTCTTGGTTGGAAAGGGGACACCATGGCCAGGCCAGCAATAGGGGCAGGCAGTCAGCAAAGGACTCTTTCAATTAAAACATTGGAGGTTCTTTGTTAAATCTTTACCTTTATTATTCAACATTCATTTAATtaattaaaacaaaataaaaaataatcctgAATAAAACAAGCAGATTACACGATTCTCAAATTACTCAAACAAAATGAGCTAGTTAATTTATTCTAGTCAAAAAAAATCACAGAATTTTATCAGCAAATGTTCTAAAATGGTAGTGAATCTCAAGCTAGATTCCCCCTGACAATTTGAATGAATTTGAGTGCATTTGTTTCTCCTGTGATAGTTTCAAATCAAGCACACCGTTTCCCCAAGATAACAGCATGTCATTTGGTGGTTGTGGTTCATGTCATTTTAATTCCAATCATCAACTCAAATATACAAAAAAAATCTGTTCTCTACACCCATTATTCAAACAATTACTGTTAAGTACCATAAAAGGGTTGAATTCAGTAGTACTAGCTCGTCCGTGATGTGACACCGTCTGCAATACAATACTGGTGttgtcttaaaaaaaaaaaaaaaagaggatggaccctcccgggtggcgcagtggctctgggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccatggggcgacgcacaattggcctagcgtcgtccgggttaggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgttttctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagcagcgcggcttggttgggttgtgtatcggaggacgcatgactttcaaccttccgTCTCTCccgaactcatggataccatttttcaTGCCCGTGTTTcagcaagccaatgctaactagtgttagcgcaatgcCTGGAAGTCTATGGTTTCTGCGAGCATGCAACGTGTACGCTAACCTAATAGGCCGGATTTAGAACAGAACCCTGGGCAGCCACTCGTCCCAGAAACTAGGGGAAACTACAACAAATAAGTTAAATATGTCCTCTTAaaaagtcacagaaaaacaactTGAGATGCAATTAATCAAAATCATAAAAAGGGATGGAATCAGTGCGGTGGGAGCATGGAGTGAACAGAGCCTGCGGTGACCATGGATACCAACATGGTACCATTTCTACAAATTACCATCTCTACTATCCCCAAGAAAGCAACAATCATTTGAACAGAGGGTACTCCGATTAAACATAAAACCACCTGGtaaatgaaggtaaaaaaatCAGACATATCGTCACAGGCAGCACTAACAAATAGTTGAAACACAAAGTAGTTGTTTTATTAACTAAGATATGTGGTCGTCTTACCCAACGACAttaagttgaatgcactgactaagtcactctggataagagcgtctgcgaAATTACCAAAATGTAACGGAACACAATTATATGAACTACAACCACCAAGGACAAACTTGAGATGTTATGCAGTAGTCTCCTATCCTACATCTACTGCCATGTTGGCCTCCTCAATCACATTTCAAATCATGTTAAAACACCACTGCATAGTAAACTTACttcttccaccaccaccacctcctcctcctcctcctccccccccctccgccgccgcctcctcctcctcctcctcctcctcctgagcCGTAGCTGCCGTCCCGCCGCGGCCCCTTTGTGTGTTCCACAATAACCCTCTCCCCACACAGGTCTTTCCCATTCAGGTCATACACAGCATCATCTGCATCGCGGGGGTCATCAAATTCAACAAACCCATACCTTTACACAGAGGAGACAGAGCATGTTAGGCCAGAGACAAGGTACAGATTTGGGATCCAATTATTTGACTAAATCTACTGCCAGACTCAAATGTACACGATACTTTTCATAAATCACAAAGTAACATTTGAATCGGTCCCACTCagacacatttgatttgataaaaaca

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1802377 True 3085 lncRNA 0.45 2 65792444 65796646

Neighbor

gene id symbol gene type direction distance location
xkr8.3 xkr8 coding downstream 11422 65770915 ~ 65781022 (-)
LOC110496706 LOC106589031 coding downstream 24456 65755121 ~ 65767988 (-)
LOC110496703 NA coding downstream 172244 65610940 ~ 65620200 (-)
LOC110496890 LOC106570358 coding downstream 190543 65514942 ~ 65601901 (-)
LOC110496698 LOC106570363 coding downstream 671388 65056656 ~ 65121056 (-)
epb41a LOC106589039 coding upstream 98338 65894984 ~ 66039471 (-)
LOC110496714 LOC106589042 coding upstream 254989 66051635 ~ 66068096 (-)
LOC118941206 NA coding upstream 283808 66080454 ~ 66094549 (-)
LOC118941204 NA coding upstream 316971 66113617 ~ 66117779 (-)
LOC110496715 LOC106589043 coding upstream 340802 66136708 ~ 66167671 (-)
G1575339 NA non-coding downstream 8921 65783295 ~ 65783523 (-)
G1575336 NA non-coding downstream 13692 65778445 ~ 65778752 (-)
G1575335 NA non-coding downstream 15716 65776417 ~ 65776728 (-)
G1575333 NA non-coding downstream 23157 65769051 ~ 65769287 (-)
G1575340 NA non-coding upstream 2668 65799314 ~ 65799539 (-)
G1575347 NA non-coding upstream 11281 65807927 ~ 65808736 (-)
G1575348 LOC106589032 non-coding upstream 14133 65810779 ~ 65812085 (-)
G1575349 NA non-coding upstream 16289 65812935 ~ 65813585 (-)
G1575350 NA non-coding upstream 17251 65813897 ~ 65814128 (-)
G1575088 NA other downstream 481393 65310043 ~ 65311051 (-)
G1573887 NA other downstream 821277 64970291 ~ 64971167 (-)
LOC110496680 LOC106589004 other downstream 1547630 64017203 ~ 64244837 (-)
G1573054 NA other downstream 1777479 64013779 ~ 64014965 (-)
G1572487 NA other downstream 2301275 63435798 ~ 63491169 (-)
G1575282 NA other upstream 984 65797630 ~ 65798675 (-)
G1575457 NA other upstream 217823 66014469 ~ 66053735 (-)
G1575475 NA other upstream 259036 66055682 ~ 66056239 (-)
ppp1r11 ppp1r11 other upstream 441452 66238098 ~ 66242725 (-)
G1575541 NA other upstream 504769 66301415 ~ 66305176 (-)

Expression


Co-expression Network