G1575348 (LOC106589032)


Basic Information

Item Value
gene id G1575348
gene name LOC106589032
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65810779 ~ 65812085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1802455
tttgaccagagccctatgagtgcaggtcaagagtagtgcactatatagggaatagggtgtaatttgggacacaaccttggtaataaccaggagAAGGACAGCAAACGGACAACATAGTACGTGAAGGGATTTATTACCCATTCATAAGCCCTACATTACCCATTCATAAGCCCTACATAACCCATTCATAAGCCCTACATAACCCATTCATAAGCCCTACATAACCCATTCATAAGCCCTACATAACCCATTAACAAGCACTACATAATACTTAATCAATGCTTATGTACTGTTTATGAATGTGTAATGAAGTCTTTATGTAGGTAACCTTCAAATAAAGTGTTATCAACCTATCATTAACTATGTGTTTATCTGCTCCACAGCCAATTAAAGCATTATTCTGCATAACTATGTAGATGTAGATTACACATGACATCTCTATCATCATGCACTTGTTTTGGTCTATGGAACATGTGTTTTATTTTACTAGCTGTTATCAGAAGCACATCTGAGGCTCGCCGACAGATTTGAGTAGTTTGGTTTTTAACTAGATTACACAGTGAAGACAGTCCCTCGTTAGAATGCGTTTTCCACCTCCAACATTCGGATGTGCTTGTTGTGTCCTGGAAACAAGCAACGCCTTGGCAATGAAAGACAAATTGATTCCTTCAGTGTTGCCAAGTGTCAAGGCCTAACTGCCACCCAGTAAACAGACTGGGAAATGTCTTTGACAGTATGGAGTATTGTTCCCCTCTTGAAACAGAACGTCTGCCAAGCCGATCCAATTGGTCTGCAGTCCTCCGACACTTGTGTTTATATATCCACGCCACGGGAAGTCCGAGTAACAAGGTTTCTAAAAGGTTTGTATCTTCAGATGTGGAAGCTGCTCGACGCCGTGGAGAGGAATTCGGTGTCGTACAATAAAAGAGTTTCTCGGTTTCAGGAGTCAGTGAAAACAGAGTTATAATCCAACGGAAAAAGCTCCTACTCCTGGTCGTCGATATATCAGCATCCGTGAGGATCTTTCTTCATAAGCTGCTtttaacaaacagacagaggaccCTGATATGGGGCCCTTACTGGGTCTCATTGGAAAGGCCCTGAGCCGAAACTCTTATCCCACTGAGAACACTGCTGCTCCAACTGGTCTAGCAGTCTGTCCACCGAGTCCTCCTTATTGTCCAGCTTCAGGTACCTGCGGGCACAGCCCAGGTCTAACCGGGGCCAGCTGCGATGCTTCTGTTCCTCTACGGGGGTGAGCTCCGGGGTCTCCACACATCCAACCATGTTCACACACACGTCCAAGC

Function

NR:

description
transmembrane protein 200A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1802455 True 1307 lncRNA 0.44 1 65810779 65812085

Neighbor

gene id symbol gene type direction distance location
xkr8.3 xkr8 coding downstream 29757 65770915 ~ 65781022 (-)
LOC110496706 LOC106589031 coding downstream 42791 65755121 ~ 65767988 (-)
LOC110496703 NA coding downstream 190579 65610940 ~ 65620200 (-)
LOC110496890 LOC106570358 coding downstream 208878 65514942 ~ 65601901 (-)
LOC110496698 LOC106570363 coding downstream 689723 65056656 ~ 65121056 (-)
epb41a LOC106589039 coding upstream 82899 65894984 ~ 66039471 (-)
LOC110496714 LOC106589042 coding upstream 239550 66051635 ~ 66068096 (-)
LOC118941206 NA coding upstream 268369 66080454 ~ 66094549 (-)
LOC118941204 NA coding upstream 301532 66113617 ~ 66117779 (-)
LOC110496715 LOC106589043 coding upstream 325363 66136708 ~ 66167671 (-)
G1575347 NA non-coding downstream 2043 65807927 ~ 65808736 (-)
G1575340 NA non-coding downstream 11240 65799314 ~ 65799539 (-)
G1575283 LOC105008066 non-coding downstream 14133 65792444 ~ 65796646 (-)
G1575339 NA non-coding downstream 27256 65783295 ~ 65783523 (-)
G1575336 NA non-coding downstream 32027 65778445 ~ 65778752 (-)
G1575349 NA non-coding upstream 850 65812935 ~ 65813585 (-)
G1575350 NA non-coding upstream 1812 65813897 ~ 65814128 (-)
G1575354 NA non-coding upstream 8136 65820221 ~ 65821366 (-)
G1575355 NA non-coding upstream 9337 65821422 ~ 65821624 (-)
G1575360 NA non-coding upstream 17529 65829614 ~ 65830051 (-)
G1575282 NA other downstream 12104 65797630 ~ 65798675 (-)
G1575088 NA other downstream 499728 65310043 ~ 65311051 (-)
G1573887 NA other downstream 839612 64970291 ~ 64971167 (-)
LOC110496680 LOC106589004 other downstream 1565965 64017203 ~ 64244837 (-)
G1573054 NA other downstream 1795814 64013779 ~ 64014965 (-)
G1575457 NA other upstream 202384 66014469 ~ 66053735 (-)
G1575475 NA other upstream 243597 66055682 ~ 66056239 (-)
ppp1r11 ppp1r11 other upstream 426013 66238098 ~ 66242725 (-)
G1575541 NA other upstream 489330 66301415 ~ 66305176 (-)
LOC110496725 LOC106589055 other upstream 991339 66802870 ~ 66810492 (-)

Expression


Co-expression Network