G1575537



Basic Information


Item Value
gene id G1575537
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66270190 ~ 66272754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1802693
attatcttggcaaaggagaaatgctcactaacagggatgtaaacaagtttgtgcacaaaattgtagagaaataagctttctgtactgtacatatggaaaatttcagggatattttatttcagctcatgaaaccaacacttttaCATGtcgcatacattttttttgtgttctgtgtaatatttgactaaaacaatcatgTCAAAcctttgcttacatttgtatacgataacatatatctctctattatatgtgggaatactttggaacacatttctaaaattaaaataacttggagatgattttctggtgttttataggcttttatgtaaaaaaaaaaaaaaaaaagtaaaacacTTTTGCTTGGAACCTGGGGGGCCCAAAAAAATCACCTGCGGGCCAAATTCGGCTGGGGAACCCTGGGATAGAGTATGCTgtttttatgATGACAGACAAGTGGTATTATTTGAATAATGTATTATTTTACATTCATGCCTATATGGCTTGACTCCAAGCAAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTGGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTAGGGGTAGGGTCACCACTGTAGTTAGGGGTAGGGTCACCACTGTAATTAGGGGTAGGGTCACCACTGTAATTAGGGGTACGGTGACCACTGTAGTTATTCCAGGGCCTGCAGTTCTTGGTGTTCAATGGCAGAAAACCTGGTAGTCCACGATTGATATAATCAATGTCCGATCCAGAGTTGAATCCCTGCAGACAGACACTGTAGACAGTCAAGTTGTCCATGTAGAGGGAGGTCCCCTCTCACTGTGATTgtgtttcaaatggcaccctattccctacgttgtgcactactttagaccagggtcctattccTCACAGTGATCATCACTAGTTAACCCCGCCTAGTTCTAAAATGTCTCttcttaaaatcagattttaaacctaaccacactgcta

Function


NR:

description
PREDICTED: proline-rich protein 36-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1802693 True 2296 lncRNA 0.47 3 66270190 66272754

Neighbor


gene id symbol gene type direction distance location
ppp1r11 ppp1r11 coding downstream 27465 66238098 ~ 66242725 (-)
LOC110496716 LOC106589044 coding downstream 54983 66180396 ~ 66215207 (-)
LOC110496892 LOC106589045 coding downstream 90599 66170696 ~ 66179591 (-)
LOC110496715 LOC106589043 coding downstream 102519 66136708 ~ 66167671 (-)
LOC118941204 NA coding downstream 152411 66113617 ~ 66117779 (-)
ddx39b uap56 coding upstream 21359 66294113 ~ 66313899 (-)
LOC110496727 LOC106589058 coding upstream 420584 66693338 ~ 66696327 (-)
LOC110496726 LOC106593810 coding upstream 475428 66748182 ~ 66775081 (-)
LOC110496895 NA coding upstream 514294 66787048 ~ 66788994 (-)
LOC110496725 LOC106589055 coding upstream 530116 66802870 ~ 66810492 (-)
G1575542 NA non-coding downstream 41054 66228937 ~ 66229136 (-)
G1575514 NA non-coding downstream 117423 66152373 ~ 66152767 (-)
G1575413 NA non-coding downstream 134901 66134823 ~ 66135289 (-)
G1575561 NA non-coding upstream 25493 66298247 ~ 66298722 (-)
G1575565 NA non-coding upstream 47544 66320298 ~ 66320565 (-)
G1575570 NA non-coding upstream 53989 66326743 ~ 66327020 (-)
G1575566 LOC106589051 non-coding upstream 54558 66327312 ~ 66328021 (-)
G1575578 LOC106589051 non-coding upstream 76540 66349294 ~ 66353229 (-)
G1575475 NA other downstream 213951 66055682 ~ 66056239 (-)
G1575457 NA other downstream 216455 66014469 ~ 66053735 (-)
G1575282 NA other downstream 471515 65797630 ~ 65798675 (-)
G1575088 NA other downstream 959139 65310043 ~ 65311051 (-)
G1575541 NA other upstream 28661 66301415 ~ 66305176 (-)
G1575774 NA other upstream 553828 66826582 ~ 66826877 (-)
LOC118941007 NA other upstream 597137 66857937 ~ 66870926 (-)
LOC118941008 NA other upstream 785423 67058124 ~ 67058673 (-)

Expression



Co-expression Network