G1576260


Basic Information

Item Value
gene id G1576260
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67384143 ~ 67386610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1803566
TTtacaacactgtcattaaccctctcctctgtcagtgtgtgttatGAAACAGAAAACATCCTTTTCCTACTAGAAGAAGACCAAACAACTGTTTAATTTCATAAacataacaaaaacaaaaaatgttattTAAAGTTCAGCTGGTACACAGTGTTACATGGGGCATTGGTCCATTGGACATAAGGGTAGAGAGATAGCCAACAGAACAAGGTGAAACTGGTCGGAAAGGAATTTACCACAGTACATCACTTTACTGGGTCACGTTACGTAGGCAGAAACAAAACAGAAGAAATAGTTTCAAACAAGTTGGAAAGTAATTCAGGAAGTACCTCTTTTTCAAAAGTGCTTTCTCCTGTTTCATGGCAACGGAACCAGACTCTAGTATGTAAAAGAATGCATGCCCAATATAACCACAGAAAGTAAGGAGTACCTAAATGTATTGTCTTGCTTGGTCTTTATGGTACTGAGAATATTTATGTtcaatactatatatatatatcttatatATAATACATATTTACTGTGACAAATGAAGACTGGTTTAACTCCAAATCTCAAAACTGGGTGGCtcgagctctgaatgctgattggctgacagccgtggtatatcagactgtataccacgggtatgacaaaactttatttttactgctctaattacgttggtaaccagtttataatagcaataaggcacctcgggggttttgTGGAatattggccaatataccacggctaagggctgtgtccaggcactccgcgtcaCATCGTGCCTAAGAACTGCCCTTAGACGTGTCATATTGggcatataccacacctcctctggccttatGGCTTAAATATACATCTGACAATCACACATCTCATGATGCATGATTATAACCaacacaaaatacacacacatagaaaaaATAATACTGATTAGAGTCCAAATAGTACTACTATCAACTACTGCAGTAAATGAAAGAACAAAGTAAACCAAACAATGTAGGCTGACACACAGAGCGGTATATTTTagcaatataccacggctaagggctgttcttatgtacggggggtggtatatggccaatataccacagctaagggctgttcttatgtacgCAACGCAATTTGGAGAGCCcgtatacagcccttagccgtggtatattgaccatatatcacaaacacctgaggtgccttattgcttttataaaactggttaccaaggtaattagagcagtaaaaatacatgttttgtcatacccatggtatacagtctgatataccacggctttcagccaatcagcattcagggcttgaagcACCCAGTCTAAAAAAAGATATAAGGTACCAAGTCAAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCAAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGCCTACTCATAATCCCTAGCGCCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGTCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGCCTACCCATAATCCCTAGCGCCTACCCATAGACTCTTCCTGGCGACCCCATGTATATCTACAATATGATAGAATCTCAACCAAAGCTCTAAACCTATCCAGTCCTTTCAGATCTATAAGGGGGAGGAGTCAACCTATCCAGTCCTTTCAGATCTATAAGGGGGAGGAGTCAACCTATCCAGTCCTTTCAGATCTATAAGGGGGAGGAGTCAACCTATCCAGTCCTTTCAGATCTATAAGGGGGAGGAGTCAACCTATCCAGTCCTTTCAGATCTATAAGGGGGAGGAGTCAACATATCCAGTCCTTTCAGATCTATAAGGGGGAGGGAGTAAACTAGGGAATAAGGACAGAGACAAGGGATCGGTTTGGAATGGAACCAAAGTCAACTCTTCTATGGCCCAATCCCAAATCGACCCCTAGACCATGTGTCCtggtggagatctgagaggacttGACAGGTGCACACAATATAGTATAGTTCCAGCATAGGGCCTAGCGGTTAATTTGGGATTGGGCCAAAGACTCAAAAGGCTGTGCCTCTTGGTCGCCCTCTGGTGGTCGATCAGAAGCCAAAGAAGTCGTTCCCATTGGTGGTATTATTGTTTGATGTGTTCTTATTGGTCCTGTTCTTGTTGGGTGTGTTCCCATTGACCCAGTCAGGTTCTATCAGCCAATCCTGGGGGGTCACCCCAATGTCCAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1803566 True 2408 lncRNA 0.43 3 67384143 67386610

Neighbor

gene id symbol gene type direction distance location
srfbp1 LOC106589067 coding downstream 35159 67341388 ~ 67348984 (-)
LOC110496729 LOC106589066 coding downstream 46947 67325870 ~ 67337196 (-)
sox4a LOC106589061 coding downstream 271560 67105914 ~ 67112583 (-)
LOC118941008 NA coding downstream 325594 67058124 ~ 67058673 (-)
LOC118941007 NA coding downstream 513217 66857937 ~ 66870926 (-)
fndc5b LOC106589070 coding upstream 20702 67407312 ~ 67441367 (-)
LOC118941009 NA coding upstream 156951 67543561 ~ 67558111 (-)
eif3i eif3i coding upstream 275515 67662125 ~ 67668116 (-)
txlna LOC106589073 coding upstream 283478 67670088 ~ 67684423 (-)
LOC118941210 NA coding upstream 312566 67699176 ~ 67702000 (-)
G1576247 NA non-coding downstream 32365 67351147 ~ 67351778 (-)
G1576234 NA non-coding downstream 61950 67321788 ~ 67322193 (-)
G1576226 NA non-coding downstream 71014 67312193 ~ 67313129 (-)
G1575990 NA non-coding downstream 170894 67213003 ~ 67213249 (-)
G1575972 NA non-coding downstream 186321 67197362 ~ 67197822 (-)
G1576222 NA non-coding upstream 14838 67401448 ~ 67441976 (-)
G1576266 NA non-coding upstream 24839 67411449 ~ 67412631 (-)
G1576288 NA non-coding upstream 88849 67475459 ~ 67476466 (-)
G1576290 NA non-coding upstream 93387 67479997 ~ 67480440 (-)
G1576294 NA non-coding upstream 108721 67495331 ~ 67495687 (-)
G1575977 NA other downstream 180656 67203201 ~ 67203487 (-)
G1575774 NA other downstream 557266 66826582 ~ 66826877 (-)
LOC110496725 LOC106589055 other downstream 573677 66802870 ~ 66810492 (-)
G1576491 NA other upstream 528578 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 1235638 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1362002 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1926276 69312886 ~ 69315998 (-)

Expression


Co-expression Network