G1576288


Basic Information

Item Value
gene id G1576288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67475459 ~ 67476466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1803595
cactactaccctgtaggccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctataggccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagt
>TU1803596
TGTgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtcttttcgaCCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATGACTTGACCTGAAATCACAAAAGAAAAGGTACTTTTGGATCAGagtgttacatcccaaatggcaccctataggtcctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctataggccctggtctaaagtagtgcactactaccctatagaccctagtctaaagtagtgccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagt
>TU1803597
TGTgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtcttttcgaCCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATATATgtatgcctgtctctctctgtctttttgacCAACAGACTTAATGACTTGACCTGAAATCACAAAAGAAAAGGTACTTTTGGATCAGagtgttacatcccaaatggcaccctataggtcctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagtagtgcactactaccctatagaccctggtctaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1803595 False 233 lncRNA 0.47 3 67475459 67475901
TU1803596 False 623 lncRNA 0.42 3 67475459 67476466
TU1803597 True 588 lncRNA 0.42 3 67475459 67476466

Neighbor

gene id symbol gene type direction distance location
fndc5b LOC106589070 coding downstream 34092 67407312 ~ 67441367 (-)
srfbp1 LOC106589067 coding downstream 126475 67341388 ~ 67348984 (-)
LOC110496729 LOC106589066 coding downstream 138263 67325870 ~ 67337196 (-)
sox4a LOC106589061 coding downstream 362876 67105914 ~ 67112583 (-)
LOC118941008 NA coding downstream 416910 67058124 ~ 67058673 (-)
LOC118941009 NA coding upstream 67095 67543561 ~ 67558111 (-)
eif3i eif3i coding upstream 185659 67662125 ~ 67668116 (-)
txlna LOC106589073 coding upstream 193622 67670088 ~ 67684423 (-)
LOC118941210 NA coding upstream 222710 67699176 ~ 67702000 (-)
kpna6 LOC106589075 coding upstream 226075 67702388 ~ 67729353 (-)
G1576266 NA non-coding downstream 62828 67411449 ~ 67412631 (-)
G1576222 NA non-coding downstream 70652 67401448 ~ 67441976 (-)
G1576260 NA non-coding downstream 88849 67384143 ~ 67386610 (-)
G1576247 NA non-coding downstream 123681 67351147 ~ 67351778 (-)
G1576234 NA non-coding downstream 153266 67321788 ~ 67322193 (-)
G1576290 NA non-coding upstream 3531 67479997 ~ 67480440 (-)
G1576294 NA non-coding upstream 18865 67495331 ~ 67495687 (-)
G1576295 NA non-coding upstream 28212 67504678 ~ 67505026 (-)
G1576296 NA non-coding upstream 28612 67505078 ~ 67505295 (-)
G1576300 NA non-coding upstream 34723 67511189 ~ 67511405 (-)
G1575977 NA other downstream 271972 67203201 ~ 67203487 (-)
LOC118941007 NA other downstream 605260 66857937 ~ 66870926 (-)
G1575774 NA other downstream 648582 66826582 ~ 66826877 (-)
G1576491 NA other upstream 438722 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 1145782 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1272146 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1836420 69312886 ~ 69315998 (-)
G1578111 NA other upstream 2090718 69567184 ~ 69568164 (-)

Expression


Co-expression Network