G1576309


Basic Information

Item Value
gene id G1576309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67531804 ~ 67627606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1803624
CCAACATTTATTTACCATTTGTCAACTTTACAATAAAACCATAACATCTGTCAACATTAGCAAAATAAAGAACAGTATCAGTCCCAATGTATTTACAGAGACATTAAAGTAGAGTCAGGCTTACACACACCAGACAGATGAACAATTTCTTGCTTCCTTTTAAAACTGCAACACTGAACATGTCAAACTCaagcgtgttttttttttttttttttaccccactAAGATAAAAAATCTAAAGTTGCTCCTTATGTTTCttctttaaaaacaaaacaaaacaacagcTTCTCTGAATCTTTAAAATGGTTCTCTAAAAGGTACACCACAAAATACTTCAAATTTGGGGTGAAAATATAGGAATGTAGAAAGTTGGCAAGTCTCTTTTTTTTCCTCCTCAAATTTCTGATTTCTTGTTCTTGTTGTTTTTCTAAAAATGGGATGAATAGTCATTTCATGTGGTGGTTGGGTTGGTGTCCTGTCCTATCCAGTTCATTCCTACACGTGGACGCGTCTTTTTGTTGAGTCGGGTGTTTTTAGGGAAAAGACGGGTCAACTCGACTCCCATCCATAACCGTGTTCCACTTTGCGGTCCAATAAATCCCATTGTTCCCATAGCAACCAGCACATAATACCACCAGGTTTGACCCTGTCTCGCCGTAACCAGGGAAGTGAACTAGTACCATGACAAAAGTGACACATTTGGAGTCTCAcataaatgtgtatatatttacatatacatatatccatacatatgtatacatatagacatatatatagaaatatatatttataactattttctctctctctctctcttgaaaaACAGTTCACACAGTCCTTTGTTGTGGGTAAAGATACAATCACTCTGCATTCTGTTGGGAGGGGGCTACTGCCGCGGGGGTCGAGCTGGCCTCCTCTGTTGGTTTGGTGGGCTCTGGGGCAGGTGCAGCCGcctcctttacctcctcctccttaGGTGCCTCCTCTGCTTTAGCCTGCGCCTCGTCGGCCTTAGGGGCTTCTGCAGTAGCCGTCAcaacctcttcctcctctgctttCTTCTCCTCCGTAGCCACAGCGGCTCCGTTCTCTGCAGGTTTCTCCTCAGCGGAAGCGgccgcctcctcctccttcacctcctccttcTTGGTCTTCTTCAGTTTCAGGCCCTTGAAGTTGAAAGATTTCTTCAGGAAgaaattcttcttcttcttggagATATCCTTGGCAGCGGCCTCACCTTCCTGTTTGGCGGCCTCGCCATCGGGCGCTGGCTCGATGGCGTCCCCTCCAGCACCCGCTTCAGGCTCCTTGGCGTCGGCAGAACCATTTGGAGCGGCCGTGTCTGTGGCATCACCATTGGACTTGACATGACCGTTCTCCTGTCCATTCGGTTTGACGGTGGCGGCATCCGCAGCATTCGCCTCCACAGCTACCCCTCCCTTGGACGCTTGGGAACCCATCGTTATTCGGTGTTTATCAAAGAGAATTAAACCAACAACAAAATGTTTGTCTCAATTTAATCCAGCTCCCGGGCAGTAGTATGGATCCAATgacaaaatgtgattttttttttgtgtggg
>TU1803623
GGATGAGAGAGCGGTTACATACCTGTCCATTCGGTTTGACGGTGGCGGCATCCGCAGCATTCGCCTCCACAGCTACCCCTCCCTTGGACGCTTGGGAACCCATCGTTATTCGGTGTTTATCAAAGAGAATTAAACCAACAACAAAATGTTTGTCTCAATTTAATCCAGCTCCCGGGCAGTAGTATGGATCCAATgacaaaatgtgattttttttgtgtgggggggggggggggggtgttttccATGGTGAATACAGAGTATAATGCTAATCCCTTCCAGTAagtaaaccatgtgtttgatttatttatataaaaaaaaaagctttcTTTCTCGTTCTAGTTCTCTCATTTGTCGAATCTCAGGAAATTCCTCTGAGAGAggtcagtgtgtgagtgagtgagtgcgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1803624 False 1583 lncRNA 0.45 3 67531804 67627606
TU1803623 True 407 lncRNA 0.44 2 67610907 67625042

Neighbor

gene id symbol gene type direction distance location
fndc5b LOC106589070 coding downstream 90437 67407312 ~ 67441367 (-)
srfbp1 LOC106589067 coding downstream 182820 67341388 ~ 67348984 (-)
LOC110496729 LOC106589066 coding downstream 194608 67325870 ~ 67337196 (-)
sox4a LOC106589061 coding downstream 419221 67105914 ~ 67112583 (-)
LOC118941008 NA coding downstream 473255 67058124 ~ 67058673 (-)
eif3i eif3i coding upstream 34519 67662125 ~ 67668116 (-)
txlna LOC106589073 coding upstream 42482 67670088 ~ 67684423 (-)
LOC118941210 NA coding upstream 71570 67699176 ~ 67702000 (-)
kpna6 LOC106589075 coding upstream 74935 67702388 ~ 67729353 (-)
trnay-gua-8 NA coding upstream 180900 67808506 ~ 67808593 (-)
G1576308 NA non-coding downstream 883 67530532 ~ 67530921 (-)
G1576301 NA non-coding downstream 17974 67513615 ~ 67513830 (-)
G1576300 NA non-coding downstream 20399 67511189 ~ 67511405 (-)
G1576296 NA non-coding downstream 26509 67505078 ~ 67505295 (-)
G1576295 NA non-coding downstream 26778 67504678 ~ 67505026 (-)
G1576359 NA non-coding upstream 62433 67690039 ~ 67699105 (-)
G1576367 NA non-coding upstream 77649 67705255 ~ 67705540 (-)
G1576374 NA non-coding upstream 105041 67732647 ~ 67732872 (-)
G1576222 NA other downstream 89828 67401448 ~ 67441976 (-)
G1575977 NA other downstream 328317 67203201 ~ 67203487 (-)
LOC118941007 NA other downstream 661605 66857937 ~ 66870926 (-)
G1575774 NA other downstream 704927 66826582 ~ 66826877 (-)
G1576491 NA other upstream 287582 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 994642 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1121006 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1685280 69312886 ~ 69315998 (-)
G1578111 NA other upstream 1939578 69567184 ~ 69568164 (-)

Expression


Co-expression Network