G1576954


Basic Information

Item Value
gene id G1576954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68245579 ~ 68247364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1804374
GACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAGAAGAAATAAAAACAATCAGAAGTAAAAGTATGAACCTTTTTTAAATT
>TU1804378
GATTAGCAGATAGATAGAAATAGTCTATCAACTGTCACAATGAAATGAGGATGTGTTACCACCAGTTCGTAGGGAAGGTATTAGTAACAGAGTAAAACTGACAACTGTCACACTGAATAATGATTCATTACCACCAGTTCGTAGGGAAGGTATTAGTAACAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCCCCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCCCCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAGAAGAAATAAAAACAATCAGAAGTAAAAGTATGAACCTTTTTTAAATT
>TU1804380
GATTAGCAGATAGATAGAAATAGTCTATCAACTGTCACAATGAAATGAGGATGTGTTACCACCAGTTCGTAGGGAAGGTATTAGTAACAGAGTAAAACTGACAACTGTCACACTGAATAATGATTCATTACCACCAGTTCGTAGGGAAGGTATTAGTAACAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGTCACACTGAATAAGGATGTATTACCACCAGtgtgtaggtacagtattagtaacAGAGTAAAACTGACAGAAGAAATAAAAACAATCAGAAGTAAAAGTATGAACCTTTTTTAAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1804374 False 319 lncRNA 0.35 2 68245579 68246473
TU1804378 False 713 lncRNA 0.36 2 68245579 68247364
TU1804380 True 497 lncRNA 0.36 2 68245579 68247364

Neighbor

gene id symbol gene type direction distance location
trnay-gua-61 NA coding downstream 351432 67894060 ~ 67894147 (-)
trnay-gua-60 NA coding downstream 352903 67892589 ~ 67892676 (-)
trnay-gua-59 NA coding downstream 354375 67891117 ~ 67891204 (-)
trnay-gua-58 NA coding downstream 355849 67889643 ~ 67889730 (-)
trnay-gua-57 NA coding downstream 357323 67888169 ~ 67888256 (-)
khdrbs1b LOC106589082 coding upstream 28075 68275439 ~ 68295886 (-)
LOC110496744 LOC106589083 coding upstream 84884 68332248 ~ 68355140 (-)
LOC110496749 hpca coding upstream 152620 68399984 ~ 68469327 (-)
nt5c1aa LOC106589086 coding upstream 294935 68542299 ~ 68602274 (-)
LOC118941211 NA coding upstream 374649 68622013 ~ 68626119 (-)
G1576928 NA non-coding downstream 45599 68199345 ~ 68199980 (-)
G1576911 NA non-coding downstream 79380 68165841 ~ 68166199 (-)
G1576831 NA non-coding downstream 237716 68007470 ~ 68007863 (-)
G1576553 NA non-coding downstream 265661 67979676 ~ 67979918 (-)
G1576540 NA non-coding downstream 277757 67967596 ~ 67967822 (-)
G1577044 NA non-coding upstream 178135 68425499 ~ 68426564 (-)
G1577096 NA non-coding upstream 256494 68503858 ~ 68504111 (-)
G1577101 NA non-coding upstream 258196 68505560 ~ 68505774 (-)
G1577104 NA non-coding upstream 261995 68509359 ~ 68509570 (-)
G1577123 NA non-coding upstream 288634 68535998 ~ 68536205 (-)
G1576491 NA other downstream 290367 67915188 ~ 67955212 (-)
G1576222 NA other downstream 803603 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1042092 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 1186906 67058124 ~ 67058673 (-)
LOC118941007 NA other downstream 1375380 66857937 ~ 66870926 (-)
G1577745 NA other upstream 501248 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1065522 69312886 ~ 69315998 (-)
G1578111 NA other upstream 1319820 69567184 ~ 69568164 (-)
G1578132 NA other upstream 1356896 69604260 ~ 69606902 (-)

Expression


Co-expression Network