XLOC_000349


Basic Information

Item Value
gene id XLOC_000349
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29500308 ~ 29501034 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002842
TCGCAAATCCATTTGTAGTTTTGACTCCACCCCCACCTTCCTACTGGACATTTAAAGGATTGTACTGTCTCCAGGTTACTTGCAGTTTCTCTCAGTGTGCGATCAAAAGTAACTGTCATGGTCACACAATGGAGACAAGGATTGTTATCTCTTCAGTTTATTCAAAACACAATGGATTGTTCAACAGGAGAAGTTGGGAGACACATCCATAAGAGAAGTGGAACATCCATGGAAGAAGCCGAGCTAGGAAGAAGGTTAGGTGAACCATCTGACATTGTATGACTGGAAACGAGAAGTGTTTATAGGGGATGGTAATTGCTTTTGTAGGTGTGTCTCATTAGAACTCAGGTGATAGTGCTTGGGTGTGATGAGAGACAGAAGAAGGTGAGAGATGATTGGAGCTTTGGGAACGAGATAGGGATGTGAAAGTAACACACATGCAgaatatttctatttatatataatatacacactctttgttgtagttttaaaaaaaaaaagatattgcaAAGAACAATTGTcagaaatattaattaatatgccTATTATTAGATACTAGTCTTTTCAAAGCAATTTAAACTACCTCTTCAATATGtacaataag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002842 True 604 lncRNA 0.37 2 29500308 29501034

Neighbor

gene id symbol gene type direction distance location
XLOC_000348 CT573186.2 coding upstream 47575 29451465 ~ 29452733 (+)
XLOC_000347 CT573186.1 coding upstream 54589 29444452 ~ 29445719 (+)
XLOC_000345 fam155a coding upstream 109274 29281764 ~ 29391034 (+)
XLOC_000346 BX908780.2 coding upstream 187749 29311527 ~ 29312559 (+)
XLOC_000344 lig4 coding upstream 228835 29267841 ~ 29271473 (+)
XLOC_000350 CR774189.1 coding downstream 6613 29507647 ~ 29508473 (+)
XLOC_000351 si:dkey-228l14.1 coding downstream 14126 29515160 ~ 29519002 (+)
XLOC_000352 raph1b coding downstream 163302 29664336 ~ 29743640 (+)
XLOC_000353 cpb2 coding downstream 258644 29759678 ~ 29764060 (+)
XLOC_000354 zc3h13 coding downstream 265691 29766725 ~ 29797907 (+)
XLOC_000340 BX908780.5 non-coding upstream 319660 29174195 ~ 29180648 (+)
XLOC_000336 CU469541.1 non-coding upstream 595673 28903770 ~ 28904635 (+)
XLOC_000358 NA non-coding downstream 573601 30074635 ~ 30079529 (+)
XLOC_000360 dre-mir-740 non-coding downstream 664919 30165953 ~ 30166065 (+)
XLOC_000361 BX255890.2 non-coding downstream 726357 30227391 ~ 30227505 (+)
XLOC_000365 BX548015.2 non-coding downstream 1352935 30853969 ~ 30859524 (+)

Expression


Co-expression Network