XLOC_003490


Basic Information

Item Value
gene id XLOC_003490
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26226082 ~ 26234069 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008618
AGTGTGACCTTAAAAGTTCGCCTTAAGGTGAACCCGAGCCCTTGCCTTGATCCCTCGCCACCCCGGAGGAAAAAAGGACAATCGAAAAGACACATATTTACAAGCACAACAACACACCAACAATGAATAAAATAGGCTCCAAATACCAGAACGTGTTGGCAGTTTTCTCCCATAAATGTAACAAGGCTTCTCAAATCTTCCTTGATTACAGTAATCTCTCTGGCAGACGCGTCTCCAtttgtttttacttctttttttttctttttttttttttgttttacgaaAAACGGCGTCGTCTTTAAACAgttcacacaacacaaacacaaaaaatcaAAGGAGCAATGTTTTTCCTTGTCTTTTTTGAGGAAAAAGAGAGATCGAGAGAGAACTCATCACCTGTCCAGCTCATATTTTCTCCCCTTTGAAGCTTTCTGTTCGGTCCGATCCTTTCAGACTTACTTGACAATTTACCCGCTGCCCCAAATCAAACCGTCTCTCTTTGGCAAACAAGAGATCCAAACACATCACTACCACGAATAGATTGGCAATACATACGAAATAGCTCCAACTCAAAACGGACGCTCCTTCAGTGGTCGACATCCAGACTAAACCGTGATCGAGGGCGAACACCACAGTATGCTTAAGGTAAAGTTCGATGGCAGACGTTCATGAACCACGCGAGTGCTTGTGCTTCTGAATTCTTCTCGAAAGTGCACACATGATGACCAGATAAAAAAGCTCTTTGTTAGACAAACACTGAGGCGAATAGTTTAACAGcttccaaagaaaagaaaaaaaaacaacagatgaAACAACGGATGGAAAAGAAGAAAGGATGCAAGGAGCCAAAGCAGATTTGGGCAATGGAGCTTAGCTTAAGAACAATGTGctgagaaacaaaacaaaaacacacacacacacagacagtcttGGGTTCTCCTCTCTTGTATAATTCAGCATCATGGCCAATTGAGTTGGATTCCTGGGTTGTGTTAGGCTTGTGTAATACGGTTTTGCCAATTTAAAGCCCATCAGCAGCATCAGAGGATATGACAATTGTTATGTAATGATGGATTACATGGGATTGTGGAAAAACTGAGGAACTGATGGTGGACAGGATTCAGAGAAGAATCAGAATGAAATGTCATGAACAACTGGATTTCTTAACCGTACATTGAGGAAGAATCCCTCAAAACTTGTCATATTTCacctcaaaataaaaagatattttttttttgtcccaagAAACCAATTTAGAAGACcattaaagtttttttcttaatCTGTTAAGGCAACACATTCTATTTTGATGCAAAAGTGTTTTCATATTCATAGAGGAAAATATTAAGTGCAAGTGAATTGTTCACTTTCATGTTTCAAAtatcatttgtaaaaataaaatatcaaaataatttcACTGTGTATGTCTGTTgtccttcactgactcagtaggtgcagagaatagtgtcaaacagtcgtGTGTGTATAgattatcctgtcacaaaatgcgtaGAAAATCCTTCActacagtaatagtttgattgcggtgtttatatgtctgtactgcacttaataatgcaactaaaatcagGAAATTCTTAATGTCTTaatccgatttctgtttagttcgattatgaccctAATCAGATTAAATTgttcaaaaatcactgtttacatggtagactcttaatcagagtattgtcttaatcatattaaaatcttattattggtgtccatgtgaacGTACTCAATGTTGCATTGCCATTCAGCACAACATATATTTAagcaaaaatcaaatcaaatactaTGACTAATTATACAAATAAGTGatcatattcagttttattaaattttaattgattaaaagtTTCTTGCtgacaaatgtattaaaaagctGTTTGAaggaaaaagtttatttaaatatgatttaaacaAGTATTGTGGGGCTGGACTTGTGATCCTTTAAAAAGAAGTCTTCTAATGTGATTTAATGATTATAACATTTTTGCTATATAAGCAATTATTacctttaattacattttatgcagtttgatttgaaaacattttcattattgacTCATAGCTTCTTAACTTGTAAAACAACTAAATTTGAATTTCAGTACTGCCTTTATAATCAAATTCTcattttttattacttaaaatacttacaatacaataaacaaaaaatgagaatcatttcaacaacaaaaaataaactcagaaaaaaatagtaaaatatctGAACATATTACAataatgagagtgtgtgtgttctttgACAATAATAGTGTCTcagtaaaattcattcattcattcattcatatttcttAGACTTAGTtcctctattaatcaggggtcgccacagtggaatgaaccgccaacttatccagcatatgttttatacagcagatgcccttccagctgtaaccctgtactgggaaatatccatacactctcacacactacggccaatttagtttattcaattcacctatagcgcatgccttggactgtaggggaaaccagagcaccgagaggaaacccacttgaacacagtgagaaaatgcaaactccacacagaaatgccaactgacccagctgagactcgaaagAGCAACCTTAaaccaccgtgtcacccctgtctaattaaaatataaatttcaactCCCAATCTTAATGGTCCTAAAAATAGCGAaacaataattttgtctttaaattttAAGCTTGAAATAAGACAAGTTTTCatgattattaaacatttatgagGAACCCCTGAAGGTAGGGTTCATGATCCATTACGAAACAATCAAAAACCAAAACATGTCAATGACTAGTGTAAATACTTGAAGAGTTCGTAATACTGAAACAAAAACGATTGTCATCAAATCACTTTCCAAGTCTATTTGCACTTAAACACGATCAACAAATAAAGATGACTGCAAACTACTGAAAGGGTGCGTAAACGTTGAAGCGATGAGAAACAAATCCACTTCTTCCCTTTTCAACCGCACTTTATGGCTTTTCCAAATCAGCACTGCACTCCAATTGACGTGCTGCTGCTCTCAGATAAATACCCTGCTAAAGGTCAAAAGCCTGCCTCTATTTCTAATTTGGGTTCTGCTATTCTAGTCCAGATCTTGTGCATTAGTTTTGTGCTCTTCAAAAGAGATGATTGTAATCACTAATAgccctaaataaaataaataaaacaatattgcaCAAATACTCCATAATATCACTGATATAATAAAATGACACTGTGGTTTAAGTTAGCAGAGCATTTCAAAAGCCTGCAAAagcctcaagttttttttttattttaaactcacATGACGTCTTTGTAGTAGAATTTTAATGAACATTCCTCCAAAATAAGGCTATTAGTGTATCGAAATAATTGAGCCTGCTCCTTACCTGCAGTATTACTTTACACAGATCAACAGCACCTTCGctttttgcaaaaacaaaaaaaaaaaaagtccttgtcAGTGCAGCAAAGAGCGAGGGAATTCATGTCGGTTGGTCCTTGGGTTAAAATAAAGAGGGCTCTTTTATTGCGGACCATTAAGCAAATGTGCCTTGACGTGATTTTCATCTCCTCCTCAACGCTGCTGTAAAGAGCCACACAGCATGCTGATTTTCGCAGGCCTCTCCGGTATCCCACAAATCTCGTAAACTACGTGTGTGAAATTTTCAGCGGCGGGTCCTGAGGGCTTTAAAAGCGACGCGGTCTGATTGGGGGAACTACAGGTGGATGAGGATTGTACGAGCGATGAGGAACGACAATAGTAAGGTCTCGTTTTCTGACGCACACGTTCAGACTATTAGTGACAAAAGAACATGACACACGTTAGACGGCAAGGATACACAAGTACAAATACTGTAGGTAATGTGGTTTTGCTAAATTTCCTTTAGATTTTGCTAGAATTAAATGCATGGCGACATATTACAGTGTGTAGGGTCAGAGGAGgagcattaaaacaaaaaatagaaagAGGACATTTGTGCCTGAATGACAAGAATGAACTGGAGGTGCGTCAGGAGTGACGTTTTACCTGCACCGTCGGCCCTCTTTTGAAAAGCGCCCTGCATCTCAGAGGAAGTTTCACAACACACATGAGGGAGCCAATCCCGTCTGGCCTGAGTTAGTCACCACAAGAGGGAGAACAACCAGACGAGTCactcgggaaaaaaaaaaaaaaaaatcacagaacgACAGTTGAAGAGCAGGGGTGAGCTTGGCAAATTGAGCGGGCTTGCAGAGAGGCTGTGGGTTGGGAGACATTTTGACATAAACATGAACCACTTGCCTCTTGGACAAGTATAAAAGCGATCACTTAAACATGTCCTAGTAAATGTGATTGTCTTCAAAGTaatatcttttttgtttttgttttgttttgtttgataaaaacACCAGGAACACAGGAGTCTCTTTCAGGTCATAATGAACAACACCAGCACTTATTTTTTTCAAGTGTCCCGTTCTGATCTGCTTTCTGCCAGGGGCGTGCAGACACCTCAGGTCCAGCCCTCTTTGCTCTGTAACACAAACACTCTGCCTCCATTCGCTCCTCTCTCGTTTTTTTCTGCAACACTCTATGCGTTCGGCGACTGGGTTAGACAATAGAGTCCCAGTCGAAGTCGTCCTGGATGTCGTCGGCAGGCATGCGGCGCATCTGGAAGTTACCGCCGGTCATCATGTGCTGCTGGCTCATCTGAGGATGATGGCCTGAGAGGAGAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008618 True 4745 lncRNA 0.38 2 26226082 26234069

Neighbor

gene id symbol gene type direction distance location
XLOC_003489 NA coding upstream 29937 26188517 ~ 26196145 (+)
XLOC_003488 CR318604.1 coding upstream 148021 26077947 ~ 26078061 (+)
XLOC_003487 NA coding upstream 395745 25829370 ~ 25830337 (+)
XLOC_003486 si:dkey-183j2.10 coding upstream 476022 25735478 ~ 25750060 (+)
XLOC_003485 mon1bb coding upstream 516771 25693395 ~ 25709311 (+)
XLOC_003491 ppcs coding downstream 129366 26363435 ~ 26369549 (+)
XLOC_003492 cpne1 coding downstream 141910 26375979 ~ 26401674 (+)
XLOC_003493 fer1l4 coding downstream 169265 26403334 ~ 26467054 (+)
XLOC_003494 unm_sa1614 coding downstream 242084 26476153 ~ 26562346 (+)
XLOC_003495 dynlrb1 coding downstream 370155 26604224 ~ 26615608 (+)
XLOC_003369 CR854846.2 misc upstream 10103000 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 13514086 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 13531819 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 13540483 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 13546054 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 959847 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 997887 25181857 ~ 25228195 (+)
XLOC_003497 NA non-coding downstream 468888 26702957 ~ 26709080 (+)
XLOC_003499 NA non-coding downstream 973127 27207196 ~ 27208386 (+)
XLOC_003501 NA non-coding downstream 1169802 27403871 ~ 27414474 (+)
XLOC_003502 NA non-coding downstream 1279791 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 non-coding downstream 1286387 27520456 ~ 27520573 (+)

Expression


Co-expression Network