G1577882


Basic Information

Item Value
gene id G1577882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69134149 ~ 69142759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805585
ctagcagtctgtcataatattagagagaggatagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatggacacagtagatctagctggtctgtcataatataatagagacagtagatcaagctggtctgtcaaaatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtaggtctagctggtctgtcataatataatagagacagtagatctagctgatctgtcataatataacagagatagtagatctagctggtctgtcaaaatataattgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctatcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctacctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacgtagatctagctggtttgtcataatttgagacagtagatctagctggtctgtcataatataatcaagacagtagatctagctggtctgtcataatataatagacacagtagatctagctggtctgtcataatttaatagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgttataatattatagagacagtagatctagctggtctgtcataatttaatagtgacagcagatctagctcgtcgttcataatataattgaaacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctttcataatataatagagacagtatatctagctggtatgttatatattataattgagacagtagatctagctggtccgtcataatataatagagacagtagatctagctggtctgttataatataatggacacagtagatctagctggtctgtcataatataatagagacgtagatctagctggtctgtcataatataatggagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctgttcgttcataatataattgagacagtagatctagctggtctgtcacaatataatagagagagcagatctagctggtctttcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatcgagacattagatctagctggtctgtcatattataatagagacagtagatcgagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatggagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctgttcgttcataatataattgagacagtagatctagctggtctgtcacaatataatagagagagcagatctagctggtctttcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatcgagacattagatctagctggtctgtcatattataatagagacagtagatcgagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatatgatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatcaagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctggctggtctgtcataatataatagagccagtagatctagctggtctgtcataatacaatagagacagtagatctagcttgtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctcctTTGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805585 True 2491 lncRNA 0.35 3 69134149 69142759

Neighbor

gene id symbol gene type direction distance location
myclb LOC106593562 coding downstream 123445 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 137646 68938605 ~ 68996503 (-)
hpcal4 LOC106570705 coding downstream 435041 68626876 ~ 68699108 (-)
LOC118941211 NA coding downstream 509522 68622013 ~ 68626119 (-)
nt5c1aa LOC106589086 coding downstream 531875 68542299 ~ 68602274 (-)
spag1a LOC106589120 coding upstream 95284 69238043 ~ 69262807 (-)
LOC110496771 NA coding upstream 125151 69267835 ~ 69269425 (-)
LOC110496775 LOC106589130 coding upstream 190855 69333614 ~ 69377896 (-)
LOC110496768 LOC106589124 coding upstream 570288 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 641777 69784536 ~ 69826841 (-)
G1577930 NA non-coding downstream 4124 69124005 ~ 69130025 (-)
G1577924 NA non-coding downstream 10229 69117232 ~ 69123920 (-)
G1577922 NA non-coding downstream 26919 69104434 ~ 69107230 (-)
G1577905 NA non-coding downstream 52154 69081585 ~ 69081995 (-)
G1577901 NA non-coding downstream 60389 69073085 ~ 69073760 (-)
G1577888 NA non-coding upstream 1300 69144059 ~ 69159516 (-)
G1577890 NA non-coding upstream 6444 69149203 ~ 69160821 (-)
G1577934 NA non-coding upstream 10720 69153479 ~ 69160611 (-)
G1577887 NA non-coding upstream 11185 69153944 ~ 69183527 (-)
G1577894 NA non-coding upstream 12910 69155669 ~ 69501969 (-)
G1577745 NA other downstream 346463 68748612 ~ 68787686 (-)
G1576491 NA other downstream 1178937 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1692173 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1930662 67203201 ~ 67203487 (-)
G1577996 LOC106589133 other upstream 170127 69312886 ~ 69315998 (-)
G1578111 NA other upstream 424425 69567184 ~ 69568164 (-)
G1578132 NA other upstream 461501 69604260 ~ 69606902 (-)
G1578107 NA other upstream 468744 69611503 ~ 69615183 (-)

Expression


Co-expression Network