G1577888


Basic Information

Item Value
gene id G1577888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69144059 ~ 69159516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805591
gatctagctggtctgtcatattataatagagtcagtaaatctagctggtctgtcataatatgagacagtagatctagctggtatgttatatattataatagagacagtagatctagctggtctgtaataatataatggacacagtaGAACTAGCTTGTcagtcataatatgagacagtagatctagctgctatgttatatattataatagagacagtagatctagctggtctgtcataatataatggacacagtatatctagctggtctgtcataatataatagagacgtagatctacctggcctgtcaaaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatatattagagacagtagatctagctggtctgtcattatataatggagacagtagatctagctggtctgtcataatataatagacatagtagatctagctggtctgtcataatttaatagagacagtagatctagctgttctgttataatattatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatatagtagagacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtcagttaaacactataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctgatctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctacctggtctgtcataatataattgagacagtagatctagctggtctgtcataatataatagagacagtagatctacctggtctgtcataatataatagagacatagatctagctggtctgtcataatatgagacagtagatctagctggtctgtcataatataatcaagacagtaggtctagctggtctgtcataatataatagacacagtagatctagctggtctgttataatataatagagacgtagatctagctggtctgtcataatatcatagagacgtagatctagctggtctgtcataatatcatagagacgtagatctagctggtctgtcatactataatatagaggatagatctagcttgtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacaatagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgaaatataatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattataatagagacagtagaactagctggtttgtcaaaatataatagagacagtagatctagctggtctgtcatagtataatagagccatagagacagtagatctagctggactgacataatataatagagacagcagatctagctggtctgtcataatatcatagagacagtagatttagctggtctgtcataatattagacagtagatctatatggtctgtcaaaatattatAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805591 True 1765 lncRNA 0.35 3 69144059 69159516

Neighbor

gene id symbol gene type direction distance location
myclb LOC106593562 coding downstream 133355 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 147556 68938605 ~ 68996503 (-)
hpcal4 LOC106570705 coding downstream 444951 68626876 ~ 68699108 (-)
LOC118941211 NA coding downstream 519432 68622013 ~ 68626119 (-)
nt5c1aa LOC106589086 coding downstream 541785 68542299 ~ 68602274 (-)
spag1a LOC106589120 coding upstream 78527 69238043 ~ 69262807 (-)
LOC110496771 NA coding upstream 108394 69267835 ~ 69269425 (-)
LOC110496775 LOC106589130 coding upstream 174098 69333614 ~ 69377896 (-)
LOC110496768 LOC106589124 coding upstream 553531 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 625020 69784536 ~ 69826841 (-)
G1577882 NA non-coding downstream 1300 69134149 ~ 69142759 (-)
G1577930 NA non-coding downstream 14034 69124005 ~ 69130025 (-)
G1577924 NA non-coding downstream 20139 69117232 ~ 69123920 (-)
G1577922 NA non-coding downstream 36829 69104434 ~ 69107230 (-)
G1577905 NA non-coding downstream 62064 69081585 ~ 69081995 (-)
G1577972 NA non-coding upstream 112730 69272246 ~ 69272769 (-)
G1577988 NA non-coding upstream 144276 69303792 ~ 69305421 (-)
G1577996 LOC106589133 non-coding upstream 153370 69312886 ~ 69315998 (-)
G1578002 NA non-coding upstream 163043 69322559 ~ 69446343 (-)
G1577745 NA other downstream 356373 68748612 ~ 68787686 (-)
G1576491 NA other downstream 1188847 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1702083 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1940572 67203201 ~ 67203487 (-)
G1578111 NA other upstream 407668 69567184 ~ 69568164 (-)
G1578132 NA other upstream 444744 69604260 ~ 69606902 (-)
G1578107 NA other upstream 451987 69611503 ~ 69615183 (-)

Expression


Co-expression Network