G1577996 (LOC106589133)


Basic Information

Item Value
gene id G1577996
gene name LOC106589133
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69312886 ~ 69315998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805787
CAAGTTTATTTGTAACATTAAGAGTGAAATGTCTACTTCTCCCCCTGCGGCTGGTCTGGCATACTCCTGATGATGTCAGAATCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTCCTGAGGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805789
GAATCCGACTAATGAACACAACTCAGGCTAGCACAGTAAACTTTAGCTCACCAAGTTTGCGTGAAAAGTGTATTATTGATAGCTTTAACTTCATTAGCGAATAATGCTACATAATTGTGATGTAGGCCAACTAGTTACCTGAGGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCTACCACCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805790
ATTGTCTGCAGACTATACATCAACAGAATAGGCGTGGTAAACAGGACATGCAGTCTGATTGGACACTCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTCCTGAGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805791
CAAGTTTATTTGTAACATTAAGAGTGAAATGTCTACTTCTCCCCCTGCGGCTGGTCTGGCATACTCCTGATGATGTCAGAATCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTCCTGAGGAAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805792
ATTGTCTGCAGACTATACATCAACAGAATAGGCGTGGTAAACAGGACATGCAGTCTGATTGGACACTCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTCCTGAGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805794
ATTGTCTGCAGACTATACATCAACAGAATAGGCGTGGTAAACAGGACATGCAGTCTGATTGGACACTCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTCCTGAGGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805796
CAAGTTTATTTGTAACATTAAGAGTGAAATGTCTACTTCTCCCCCTGCGGCTGGTCTGGCATACTCCTGATGATGTCAGAATCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTCCTGAGGGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCTACCACCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT
>TU1805797
ATTGTCTGCAGACTATACATCAACAGAATAGGCGTGGTAAACAGGACATGCAGTCTGATTGGACACTCACCGGGGTCGATGATAGCCAGTGTGCACACCCTGAAGTACTTTCCACAGGCCGTGCCCAGCtcgatgttgttcccactgtagTGATGGACGCCAGTCTTGGCCAACATGGCATAGTACTCCACTTCAGACTTGAGGGCAGGTGTGTTGTTGGCCAGGATGACCAGCTTGGCTTTTCCCTGGCGGATCATCTTCTGGGACTGCTTGTATCCCAGAACGTATTTACCGCTCTTCATCACCAGCTGGAGACGGGAGTTTATGGACTCCAGGGACTTTTTCGTCTTCTTTGCGGCAACCATAGCTGCGATTTAGTCCGTTCT

Function

NR:

description
PREDICTED: 60S ribosomal protein L30

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805787 False 405 lncRNA 0.51 4 69312886 69315998
TU1805789 False 333 lncRNA 0.46 2 69312886 69313907
TU1805790 False 387 TUCP 0.52 3 69312886 69315007
TU1805791 False 404 lncRNA 0.51 4 69312886 69315998
TU1805792 False 389 TUCP 0.52 3 69312886 69315007
TU1805794 False 299 lncRNA 0.51 3 69312886 69315007
TU1805796 False 408 lncRNA 0.51 4 69312886 69315998
TU1805797 True 386 TUCP 0.52 3 69312886 69315007

Neighbor

gene id symbol gene type direction distance location
LOC110496771 NA coding downstream 43461 69267835 ~ 69269425 (-)
spag1a LOC106589120 coding downstream 50079 69238043 ~ 69262807 (-)
myclb LOC106593562 coding downstream 302182 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 316383 68938605 ~ 68996503 (-)
hpcal4 LOC106570705 coding downstream 613778 68626876 ~ 68699108 (-)
LOC110496775 LOC106589130 coding upstream 17616 69333614 ~ 69377896 (-)
LOC110496768 LOC106589124 coding upstream 397049 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 468538 69784536 ~ 69826841 (-)
lrrc69 lrrc69 coding upstream 1142977 70458965 ~ 70490901 (-)
LOC118941214 necab1 coding upstream 1254631 70568365 ~ 70627332 (-)
G1577988 NA non-coding downstream 7465 69303792 ~ 69305421 (-)
G1577972 NA non-coding downstream 40117 69272246 ~ 69272769 (-)
G1577887 NA non-coding downstream 129359 69153944 ~ 69183527 (-)
G1577890 NA non-coding downstream 152065 69149203 ~ 69160821 (-)
G1578002 NA non-coding upstream 6561 69322559 ~ 69446343 (-)
G1578006 NA non-coding upstream 10843 69326841 ~ 69395733 (-)
G1578032 NA non-coding upstream 73154 69389152 ~ 69389843 (-)
G1578038 NA non-coding upstream 84866 69400864 ~ 69401536 (-)
G1577745 NA other downstream 525200 68748612 ~ 68787686 (-)
LOC118941211 NA other downstream 686767 68622013 ~ 68626119 (-)
G1576491 NA other downstream 1357674 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1870910 67401448 ~ 67441976 (-)
G1575977 NA other downstream 2109399 67203201 ~ 67203487 (-)
G1578111 NA other upstream 251186 69567184 ~ 69568164 (-)
G1578132 NA other upstream 288262 69604260 ~ 69606902 (-)
G1578107 NA other upstream 295505 69611503 ~ 69615183 (-)
G1578414 NA other upstream 769375 70085373 ~ 70085792 (-)
G1577884 NA non-coding downstream 138230 69137181 ~ 69174656 (-)

Expression


Co-expression Network