G1578006


Basic Information

Item Value
gene id G1578006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69326841 ~ 69395733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805815
CAGTCAAATAATGTCTCAATAGTATCTGCGTCCATATGACCGATTCTGTTGGAACAAACCTAAATGCAAATAGCGAGTTGAAACcgcttgtcagagaggaagatgtgagCAAATGTTATTACAGGTACAACATGTGtactagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacgacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtactagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaagtgtactagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtactagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctaaatacaacaggtgtagaagacctcacagtgaaatgctgaatacaacagg
>TU1805821
atgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacaatgaaatgctgaatacaacaggtgtagtagaccttacaatgaaatgctgaatacaacaggtgtaggtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaagtgctgaatacaacaggtgtactagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctaaatacaacaggtgtagaagacctcacagtgaaatgctgaatacaacagg
>TU1805819
gctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgcttaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggagtagatctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacattgaaatgatgaatacaac
>TU1805816
gctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgcttaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacaatgaaatgctgaatacaacaggtgtagtagaccttacaatgaaatgctgaatacaacaggtgtaggtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaagtgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaattatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgatgtagaccttacagtgaaatgctgaatacaacaggtgatgtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaatagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgatgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttaccgtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtactagaccttacagtgaaatgctgaatacaacaggtgtaggagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaatagaacttacagtgaaatgctgaatacaacaggtgtactagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttaaggtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtag
>TU1805818
gtgaaattatgaatacaacaggtgtagtagaccttacaatgaaatgctgaatacaacaggtgtaggtagaccttagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgatgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttaccgtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaattatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtactagaccttacagtgaaatgctgaatacaacaggtgtactagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgatgaatacaacaggtgtagtagaccttaaggtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtag
>TU1805812
gaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaatagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgatgaatacaacaggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805815 False 895 lncRNA 0.40 2 69326841 69331306
TU1805821 False 662 lncRNA 0.40 5 69326841 69395545
TU1805819 False 503 lncRNA 0.41 4 69327300 69395733
TU1805816 False 2454 lncRNA 0.40 4 69327593 69395733
TU1805818 False 1473 lncRNA 0.39 3 69327593 69329597
TU1805812 True 356 lncRNA 0.40 2 69330106 69330727

Neighbor

gene id symbol gene type direction distance location
LOC110496771 NA coding downstream 57416 69267835 ~ 69269425 (-)
spag1a LOC106589120 coding downstream 64034 69238043 ~ 69262807 (-)
myclb LOC106593562 coding downstream 316137 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 330338 68938605 ~ 68996503 (-)
hpcal4 LOC106570705 coding downstream 627733 68626876 ~ 68699108 (-)
LOC110496768 LOC106589124 coding upstream 317314 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 388803 69784536 ~ 69826841 (-)
lrrc69 lrrc69 coding upstream 1063242 70458965 ~ 70490901 (-)
LOC118941214 necab1 coding upstream 1174896 70568365 ~ 70627332 (-)
LOC118941013 necab1 coding upstream 1250210 70645943 ~ 70718404 (-)
G1577996 LOC106589133 non-coding downstream 10843 69312886 ~ 69315998 (-)
G1577988 NA non-coding downstream 21420 69303792 ~ 69305421 (-)
G1577972 NA non-coding downstream 54072 69272246 ~ 69272769 (-)
G1577887 NA non-coding downstream 143314 69153944 ~ 69183527 (-)
G1578038 NA non-coding upstream 5131 69400864 ~ 69401536 (-)
G1578045 NA non-coding upstream 23057 69418790 ~ 69419158 (-)
G1578061 NA non-coding upstream 43333 69439066 ~ 69440134 (-)
G1578081 NA non-coding upstream 79896 69475629 ~ 69479524 (-)
G1577878 NA non-coding upstream 91265 69486998 ~ 69507893 (-)
G1577745 NA other downstream 539155 68748612 ~ 68787686 (-)
LOC118941211 NA other downstream 700722 68622013 ~ 68626119 (-)
G1576491 NA other downstream 1371629 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1884865 67401448 ~ 67441976 (-)
G1578111 NA other upstream 171451 69567184 ~ 69568164 (-)
G1578132 NA other upstream 208527 69604260 ~ 69606902 (-)
G1578107 NA other upstream 215770 69611503 ~ 69615183 (-)
G1578414 NA other upstream 689640 70085373 ~ 70085792 (-)

Expression


Co-expression Network