G1577878


Basic Information

Item Value
gene id G1577878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69486998 ~ 69507893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805575
taatttagacagtagatctagctggtctgtcataatttaatagagacattagatctggctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatacagactgtagatctagctggtctgtcataatataaaagagacagtagatctagctggtgtgtcaaaatacaatagaggcagtagatctagccggtctgtcataatttaatagagacattagatctggctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatacagactgtagatctagctggtctgtcataatataaaagagacagtagatctagctggtgtgtcatattataatagagacagagacagtagatccagctggtctgtcatattattatagagacagtagatctagctggtctgtcataatataatagagacattagatctagccggtctgtcataatataatagagacattagatctagctggtctgtcatattataatagagacagttgatctatcttgtctgtcatcatataatagagacagtagatctagccggtctgtcataatataatagagacattagatctagctggtctgtcatattataatagagacagtagatctagccggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagttgatctagcttgtctgtcataacataatagagacagtagatctagccggtctgtcataatataatagagacattagatctagctggtctgtcatataaaaatagagacattagatctagctgttctgtcatattataatagaggcagtagatctagccggtctgtcataatacaatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatttaatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatctagctgacctgtcataatacaattgagacagtagatctggctgttatgtcataatataatagagacagtagatatagctggtctgtcataatacaatcaagacagtagatctggctggtctgtcataatataatagagacagtagatctagctggtctgacataataaaatagagacagacagtagatctagccggtctgtcataatataatagagacattagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagaaacagtagatctagctggtctgtcataatatattagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagggacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagtcgatctagctggtctgtcatattataatagagacagcagatctagctggtctgtcatattataatagagacagtcgatctagctggtctgtcatagtacaattgagacagtagatatggctgttctgtcataatataatagagacagtagatatagctggtctgtcataatacaatcgagacagtagatctggctggtctgtcataatataatagagacagtagatctagctggtctgacataataaaatagagacagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatttaatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatctagctgacctgtcataatacaattgagacagtagatctggctgttatgtcataatataatagagacagtagatatagctggtctgtgataatacaatcgagacagtagatctggctggtctgtaataatataatagagacagtagatctagctggtctgacataataaaatagagacagacagtagatctagccggtctgtcataatataatagagacattagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagaaacagtagatctagctggtctgtcattatatattagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagggacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcataatataattgagacagtagatctagctggtctgtcataatataattgagacagtagttctagctggtctgtaataatataatagagacagtagttctagctggtctgtcaaaatttgatagagatagtagatgtagctggtctgtcataaAatagtagaaacagtagatctagctagtctgccataatattatagagacagtagatgtagtagatgtagctggtctgtcataaaataatagagacagtagatctagctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagagacagttgatctagctggtctgtcatattataatagaaacagtagatctagctggtctgtcgtaatataatagagacagtagatctaacaggtctgtcataatacaatagagacagtagatcaggctggtatgtcataatataatagagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctggctggtctgtcataatgtaatagagacagtcgatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagttgatctagctggtatGTCACaaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatttagctggactgtcataatataattgagacagtagatctagctggtctgtcataatatgatagagacagtagatgtagctggtctgtcataaaataattgagaccgtagatctagctggtctgtagtaatataatagagacagttatAGAT
>TU1805576
aatataatagagacattagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagagacagttgatctagctggtctgtcatattataatagaaacagtagatctagctggtctgtcatattataatagaaacagtagatctagctggtctgtcgtaatataatagagacagtagatctaacaggtctgtcataatacaatagagacagtagatcaggctggtatgtcataatataatagagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctggctggtctgtcataatgtaatagagacagtcgatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagttgatctagctggtatGTCACaaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatttagctggactgtcataatataattgagacagtagatctagctggtctgtcataatatgatagagacagtagatgtagctggtctgtcataaaataattgagaccgtagatctagctggtctgtagtaatataatagagacagttatAGAT
>TU1805577
agtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataaaatgaattgagacagtagttctagctggtctgtaataatataatagagacagtagttctagctggtctgtcaaaatttgatagagatagtagatgtagctggtctgtcataacatagtagaaacagttgatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATCAAatagtagaaacagtagatctagctagtctgccataatattatagagacagtagatgtagtagatgtagctggtctgtcataaaataatagagacagtagatctagctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagagacagttgatctagctggtctgtcatattataatagaaacagtagatctagctggtctgtcgtaatataatagagacagtagatctaacaggtctgtcataatacaatagagacagtagatcaggctggtatgtcataatataatagagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctggctggtctgtcataatgtaatagagacagtcgatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagttgatctagctggtatGTCACaaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatttagctggactgtcataatataattgagacagtagatctagctggtctgtcataatatgatagagacagtagatgtagctggtctgtcataaaataattgagaccgtagatctagctggtctgtagtaatataatagagacagttatAGAT
>TU1805578
agctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagagacagttgatctagctggtctgtcatattataatcgaaacagtagatctagctggtctgtcataatataatagagacagtagatctaacaggtctgtcataatacaatagagacagtagatctggctggtatgtcataatataatagagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctggctggtctgtcataatgtaatagagacagtcgatctagctggtctgtcatattataatataaacattagatctagctggtctgtcatattataatagagacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagggacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcataatataattgagacagtagatctagctggtctgtcataatataattgagacagtagttctagctggtctgtaataatataatagagacagtagttctagctggtctgtcaaaatttgatagagatagtagatgtagctggtctgtcataacatagtagaaacagttgatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATCAAatagtagaaacagtagatctagctagtctgccataatattatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaaagacagtagttctagctggtctgtcataatttgatagagatagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctggctcgtctgccataatataatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagacggtagatcaagctggtctgtcatattattatagagacagcagatctagctggtctgtcataatataatagaaacagtagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTAATcaaatagtagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaagacagtagttctagctggtctgtcgcaATATAATAgaaaatagatctagctggtctgtcataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagACGGTAGATCaagttggtctgtcatactaaAATAAAGAATAGATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaa
>TU1805580
gatctagcttgtctgtcatattataagagaaacattagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagaggatctatttggtctgtcatattataatagagacagcagatctagctggtttgtcataatataatagagacattagatctagctggtctgtcatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatcaagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatctagctggtctgtcataatataatagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaagacagtagttctagctggtctgtcgcaATATAATAgaaaatagatctagctggtctgtcataatttgatagagatagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataaaatgaattgagacagtagttctagctggtctgtaataatataatagagacagtagttctagctggtctgtcaaaatttgatagagatagtagatgtagctggtctgtcataacatagtagaaacagttgatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATCAAatagtagaaacagtagatctagctagtctgccataatattatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaaagacagtagttctagctggtctgtcataatttgatagagatagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctggctcgtctgccataatataatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagacggtagatcaagctggtctgtcatattattatagagacagcagatctagctggtctgtcataatataatagaaacagtagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTAATcaaatagtagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaagacagtagttctagctggtctgtcgcaATATAATAgaaaatagatctagctggtctgtcataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagACGGTAGATCaagttggtctgtcatactaaAATAAAGAATAGATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaa
>TU1805581
agctagtctgccataatataatagagacagtagatctggctggtctgtcataatgtaatagagacagttgatctagctggtctgtcatattataatcgaaacagtagatctagctggtctgtcataatataatagagacagtagatctaacaggtctgtcataatacaatagagacagtagatctggctggtatgtcataatataatagagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctggctggtctgtcataatgtaatagagacagtcgatctagctggtctgtcatattataatataaacattagatctagctggtctgtcatattataatagagacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagtagatctatttggtctgtcataatataatagagacagcagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattataatatagacagcagatctagctggtttgtcataatataatagagacagtagatctagccggtctgtcataatataatagagacattagatctagatggtctgtcatattataatagagacagtagatctagctggtctgtcataatacaattgagacagtagatctggctgttatgtcataatataatagagacagtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatacaatagaggcagtagatctagccggtctgtcataatataatagagacagtagatctagccgatctgtcataatataatagagacattagatctagatggtctgtcataatacaatagagacagtagatctagccggtctgtcataatataatagagacagtagatctagctggtctgtcataatgtaacagagacggtagatcaagctggtctgtcatattattatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatcaagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagaaacagtagatctagctggtctgtcataatacaatagaggcagtagatctagctggtctgtcataatataatagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaagagtagttctagctggtctgtcgcaATATAATAgaaaatagatctagctggtctgtcataatttgatagagatagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataaaatgaattgagacagtagttctagctggtctgtaataatataatagagacagtagttctagctggtctgtcaaaatttgatagagatagtagatgtagctggtctgtcataacatagtagaaacagttgatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTGATCAAatagtagaaacagtagatctagctagtctgccataatattatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaaagacagtagttctagctggtctgtcataatttgatagagatagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatatagacagtagatgtagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctggctcgtctgccataatataatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagacggtagatcaagctggtctgtcatattattatagagacagcagatctagctggtctgtcataatataatagaaacagtagatcaagctggtctgtcataataaaataaagaatagATCAACTTGGTAAGTAATcaaatagtagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctggtctgtcataaaataattgatacagtagatctagatggtctgtcataatataaaaaagacagtagttctagctggtctgtcgcaATATAATAgaaaatagatctagctggtctgtcataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtttgccataatataatagagacagtagatgtagtagatgtagctgttctgtcataatgtaatagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataatgtaacagagACGGTAGATCaagttggtctgtcatactaaAATAAAGAATAGATCAACTTGGTAAGTGATcaaatagtagagacagtagatctagctagtctgccataatataatagagacagtagatgtagctggtctgtcataaaatagtagacacagtagatctagctagtctgccataatataatagagacagtagatctagctagtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaatagatatagctggtctgtcataatataatagagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805575 False 3336 lncRNA 0.36 7 69486998 69507893
TU1805576 False 725 lncRNA 0.35 4 69486998 69497523
TU1805577 False 1054 lncRNA 0.36 3 69486998 69494569
TU1805578 False 2125 lncRNA 0.35 4 69489505 69504959
TU1805580 False 2357 lncRNA 0.35 2 69489505 69498699
TU1805581 True 3167 lncRNA 0.35 4 69489505 69504959

Neighbor

gene id symbol gene type direction distance location
LOC110496775 LOC106589130 coding downstream 134648 69333614 ~ 69377896 (-)
LOC110496771 NA coding downstream 217573 69267835 ~ 69269425 (-)
spag1a LOC106589120 coding downstream 224191 69238043 ~ 69262807 (-)
myclb LOC106593562 coding downstream 476294 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 490495 68938605 ~ 68996503 (-)
LOC110496768 LOC106589124 coding upstream 205154 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 276643 69784536 ~ 69826841 (-)
lrrc69 lrrc69 coding upstream 951082 70458965 ~ 70490901 (-)
LOC118941214 necab1 coding upstream 1062736 70568365 ~ 70627332 (-)
LOC118941013 necab1 coding upstream 1138050 70645943 ~ 70718404 (-)
G1578081 NA non-coding downstream 7474 69475629 ~ 69479524 (-)
G1578002 NA non-coding downstream 40655 69322559 ~ 69446343 (-)
G1578061 NA non-coding downstream 46864 69439066 ~ 69440134 (-)
G1578045 NA non-coding downstream 67840 69418790 ~ 69419158 (-)
G1578038 NA non-coding downstream 85462 69400864 ~ 69401536 (-)
G1578067 NA non-coding upstream 29114 69537007 ~ 69564658 (-)
G1578103 NA non-coding upstream 45282 69553175 ~ 69555873 (-)
G1578113 NA non-coding upstream 61903 69569796 ~ 69573123 (-)
G1578114 NA non-coding upstream 62403 69570296 ~ 69571341 (-)
G1578117 NA non-coding upstream 66832 69574725 ~ 69576343 (-)
G1577996 LOC106589133 other downstream 171991 69312886 ~ 69315998 (-)
G1577745 NA other downstream 699312 68748612 ~ 68787686 (-)
LOC118941211 NA other downstream 860879 68622013 ~ 68626119 (-)
G1576491 NA other downstream 1531786 67915188 ~ 67955212 (-)
G1576222 NA other downstream 2045022 67401448 ~ 67441976 (-)
G1578111 NA other upstream 59291 69567184 ~ 69568164 (-)
G1578132 NA other upstream 96367 69604260 ~ 69606902 (-)
G1578107 NA other upstream 103610 69611503 ~ 69615183 (-)
G1578414 NA other upstream 577480 70085373 ~ 70085792 (-)

Expression


Co-expression Network