G1578067


Basic Information

Item Value
gene id G1578067
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69537007 ~ 69564658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805901
TGACAGGACCCATTCAATGGACCATCCATTAATTAACCTATTAAAACTACAGCACCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCACTTTAAACTACAGCGCCAGGTGTTGACAGGACACATTCAATGGACCATCCATTAATTAACCTATTAAAACTACAGCACCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCACTTTAAACTACAGCGCCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCATCAAAACTACAGAgttcttatttttttacttaacatgtatattttttaaactgcgttgttggttaagggctcgtcagtcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgcaaggtatactacacctgttgtattcagcatttcactgtaagttctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttttcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcggcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgcaaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtgtactacacctgttgtattcagcatttcactgtgaggtctactacac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584693 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805901 True 2863 lncRNA 0.40 2 69537007 69564658

Neighbor

gene id symbol gene type direction distance location
LOC110496775 LOC106589130 coding downstream 184657 69333614 ~ 69377896 (-)
LOC110496771 NA coding downstream 267582 69267835 ~ 69269425 (-)
spag1a LOC106589120 coding downstream 274200 69238043 ~ 69262807 (-)
myclb LOC106593562 coding downstream 526303 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 540504 68938605 ~ 68996503 (-)
LOC110496768 LOC106589124 coding upstream 148389 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 219878 69784536 ~ 69826841 (-)
lrrc69 lrrc69 coding upstream 894317 70458965 ~ 70490901 (-)
LOC118941214 necab1 coding upstream 1005971 70568365 ~ 70627332 (-)
LOC118941013 necab1 coding upstream 1081285 70645943 ~ 70718404 (-)
G1577878 NA non-coding downstream 29114 69486998 ~ 69507893 (-)
G1577889 NA non-coding downstream 29589 69496404 ~ 69507418 (-)
G1577894 NA non-coding downstream 35038 69155669 ~ 69501969 (-)
G1578081 NA non-coding downstream 57483 69475629 ~ 69479524 (-)
G1578002 NA non-coding downstream 90664 69322559 ~ 69446343 (-)
G1578113 NA non-coding upstream 5138 69569796 ~ 69573123 (-)
G1578114 NA non-coding upstream 5638 69570296 ~ 69571341 (-)
G1578117 NA non-coding upstream 10067 69574725 ~ 69576343 (-)
G1578118 NA non-coding upstream 14361 69579019 ~ 69579357 (-)
G1578120 NA non-coding upstream 16900 69581558 ~ 69582390 (-)
G1577996 LOC106589133 other downstream 222000 69312886 ~ 69315998 (-)
G1577745 NA other downstream 749321 68748612 ~ 68787686 (-)
LOC118941211 NA other downstream 910888 68622013 ~ 68626119 (-)
G1576491 NA other downstream 1581795 67915188 ~ 67955212 (-)
G1576222 NA other downstream 2095031 67401448 ~ 67441976 (-)
G1578111 NA other upstream 2526 69567184 ~ 69568164 (-)
G1578132 NA other upstream 39602 69604260 ~ 69606902 (-)
G1578107 NA other upstream 46845 69611503 ~ 69615183 (-)
G1578414 NA other upstream 520715 70085373 ~ 70085792 (-)

Expression


Co-expression Network