G1577567


Basic Information

Item Value
gene id G1577567
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69615279 ~ 69616967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1805166
gtgttaaacaaatcaaaatatattttatatttgagattcttcaaatatccaccctttgccttgatgacagctttgcacactcttggcattctcacaaccagcttcacctggaatgcttttccacataggagttcccacatatgttgagcacttgttggctgcttttccttcactctgcagtctgattcatcccaaaccatctcaatttggttgaggtcgtgggattgtggaggtcaggtcatctgatgcagcacttgatcacgcttcttggtcaaatagctattacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtctcactaagcccaaaccagatgggatggcgtgttgctgcagaatgctgtggtagccatgctggttatgtgccttgaattctaaataaatcactgacagtgtcaccagcaaagcacccccacaccataacaccacctcctccatgcttcacggtgggaaatacacatgcggagatcatccgttcagccacacctcgtctcacaaagacacggcggttggaaccaaaaatctccaatttggactcatcagaccaaaggacagatttccaatggtctaatgtccatttctcatgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagtggtttctttgcagcaattcgatcatgaaggcctgattcaatcagtttctgaggctggtaactctaatgaacttatcctctgcagcagaggtaactatgggtcttcctttcctgtggcggttctcatgagcGCCAATGTaatcattgcgcttgatggtttttgcgactgcacttgaagaaacattcaaagttcttgaaatgttcctgattgactgaccttcatgtcttaaagtaatgatggactgtaatttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaataaggctatcttctgtatactccccctaccttgtcacaacacactgattggctcaaatgcattaagaaggaaacaaATGCCaa
>TU1805167
gtgttaaacaaatcaaaatatattttatatttgagattcttcaaatatccaccctttgccttgatgacagctttgcacactcttggcattctcacaaccagcttcacctggaatgcttttccacataggagttcccacatatgttgagcacttgttggctgcttttccttcactctgcagtctgattcatcccaaaccatctcaatttggttgaggtcgtgggattgtggaggtcaggtcatctgatgcagcacttgatcacgcttcttggtcaaatagctattacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtctcactaagcccaaaccagatgggatggcgtgttgctgcagaatgctgtggtagccatgctggttatgtgccttgaattctaaataaatcactgacagtgtcaccagcaaagcacccccacaccataacaccacctcctccatgcttcacggtgggaaatacacatgcggagatcatccgttcagccacacctcgtctcacaaagacacggcggttggaaccaaaaatctccaatttggactcatcagaccaaaggacagatttccaatggtctaatgtccatttctcatgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagtggtttctttgcagcaattcgatcatgaaggcctgattcaatcagtttctgaggctggtaactctaatgaacttatcctctgcagcagaggtaactatgggtcttcctttcctgtggcggttctcatgagcGCCAATGTaatcattgcgcttgatggtttttgcgactgcacttgaagaaacattcaaagttcttgaaatgttcctgattgactgaccttcatgtcttaaagtaatgatggactgtaatttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaataaggctatcttctgtatactccccctaccttgtcacaacacactgattggctcaaatgcattaagaaggaaacaaATGCCaagaatgccaagcatgtgcaaagctgtcatgaaggcaaaagGTGActatttgatttgtttgacacttttttggttactaatgattccaaatgtgttatttcatggttttgatgttttcattgttattctacaatgtagaaaatagtaagaataaagaaaaacccttgaaataCCCGGAATtgtaagtcatggcaaaatgtgtagaattgaagaAAATTCTACACACAAAATTCTCTCCGCCGTCGGGAGCGGAGGAGGGGGGAGGCACCAAAATGTTTTGCCTGCAACCAAATCTTGTTTAGGGTCTTCAAAATGCTAGAGCCATCCCTGGGTAGACCCTTACCAGAACATCCACCCTCCTAACCTCCACCACAGTGTTAGAGTTACCAATAGTTACCATTATTTACCAATTGTTTTATATAATGCCAACCTTGCATTTTAGGAATCTTTGTTGTAGCTTGTTCGATGGGACAGTCACAAAAATGTAAAATTAAACGATATACAAAGAATGTGTGTAATGAAGTGGGAACAAAATGTGGCATTCCTCCTGACATCTTGTTCACCGCCTGAGATGTTATTATTCAATGTAAATATCAATACTGTATGTTACAATAAAATAATACCCC
>TU1805165
attctacaatgtagaaaatagtaagaataaagaaaaacccttgaaataCCCGGAATtgtaagtcatggcaaaatgtgtagaattgaagaAAATTCTACACACAAAATTCTCTCCGCCGTCGGGAGCGGAGGAGGGGGGAGGCACCAAAATGTTTTGCCTGCAACCAAATCTTGTTTAGGGTCTTCAAAATGCTAGAGCCATCCCTGGGTAGACCCTTACCAGAACATCCACCCTCCTAACCTCCACCACAGTGTTAGAGTTACCAATAGTTACCATTATTTACCAATTGTTTTATATAATGCCAACCTTGCATTTTAGGAATCTTTGTTGTAGCTTGTTCGATGGGACAGTCACAAAAATGTAAAATTAAACGATATACAAAGAATGTGTGTAATGAAGTGGGAACAAAATGTGGCATTCCTCCTGACATCTTGTTCACCGCCTGAGATGTTATTATTCAATGTAAATATCAATACTGTATGTTACAATAAAATAATACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1805166 False 1065 TUCP 0.43 1 69615279 69616343
TU1805167 False 1689 lncRNA 0.41 1 69615279 69616967
TU1805165 True 502 lncRNA 0.38 1 69616466 69616967

Neighbor

gene id symbol gene type direction distance location
LOC110496907 LOC106589122 coding upstream 1737 69519227 ~ 69613542 (+)
LOC110496778 LOC106589129 coding upstream 135639 69375282 ~ 69479640 (+)
si:ch211-215i13.3 LOC106589127 coding upstream 240870 69360411 ~ 69374917 (+)
LOC118941213 NA coding upstream 246803 69363041 ~ 69368476 (+)
LOC110496774 LOC106589133 coding upstream 299270 69312656 ~ 69316009 (+)
LOC110496767 LOC106589121 coding downstream 5995 69622962 ~ 69625389 (+)
LOC118941012 NA coding downstream 342093 69959060 ~ 69963271 (+)
LOC110519153 runx1t1 coding downstream 575294 70192261 ~ 70385585 (+)
LOC110504292 LOC106570754 coding downstream 882508 70499475 ~ 70549993 (+)
LOC110515400 tmem64 coding downstream 1106503 70723470 ~ 70757121 (+)
G1577621 NA non-coding upstream 6823 69607904 ~ 69608456 (+)
G1577613 NA non-coding upstream 30046 69581812 ~ 69585233 (+)
G1577610 NA non-coding upstream 46886 69567658 ~ 69568393 (+)
G1577609 NA non-coding upstream 48133 69566804 ~ 69567146 (+)
G1577573 NA non-coding upstream 76386 69537602 ~ 69538893 (+)
G1577619 NA non-coding downstream 14500 69631467 ~ 69632476 (+)
G1577629 NA non-coding downstream 16061 69633028 ~ 69633373 (+)
G1577634 NA non-coding downstream 22999 69639966 ~ 69640487 (+)
G1577636 NA non-coding downstream 27327 69644294 ~ 69644578 (+)
G1577659 NA non-coding downstream 77890 69694857 ~ 69695057 (+)
mfsd2ab LOC106570727 other upstream 485544 69078422 ~ 69130056 (+)
G1577314 NA other upstream 839017 68768387 ~ 68776262 (+)
G1576816 NA other upstream 1136611 68478073 ~ 68478668 (+)
hdac1 LOC106570688 other upstream 1972222 67636353 ~ 67660955 (+)
G1577699 NA other downstream 145746 69762713 ~ 69764253 (+)
G1578630 NA other downstream 801892 70418859 ~ 70419273 (+)
G1579579 NA other downstream 2521190 72138157 ~ 72138592 (+)
G1579615 NA other downstream 2610364 72227331 ~ 72227659 (+)

Expression


Co-expression Network