G1578948


Basic Information

Item Value
gene id G1578948
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 70759159 ~ 70760786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1806999
GTTGGTGTATACTCTACTCTGCTTCCAAAACCAGAGAAGAAGAACCAACTGACAAGACAGCATGGAATGTGTTGGTGTATACTCTACTCTGCTTCCAAAACCAGAGAAGAAGAACCAACTGACAAGACAGCATGGAATGTGTTGGTGTATACTCTATTCTGCTTCCAAAACCAGAGAAGAAGAACCAACTGACAGACAGTATGGAATGTGTTGGTGTGCACTCTATGCTGCTTCCAAAACCAGAGAAGAAGAATGAGAAAAGATGGAATAAGATGGAACCTGTTGTCAGATGGGTTTGTGGTGGAGCCAAGCCGACACCTTATAGTCATTTTGGCAGGACAAGAGAAAccggtctgggaccaggctatgggAAGACAGATTTCAGGCATGGGAACAAAGCGAAGAACAAACTAGACCAGATGATGTTTGGTAGAAGCCAGTATCCTCTACTAGACCTTCACCATCAAAGCAGCAGCATCACCACAATAAGAATATTCAAGTCCATAAAATAAAGTGATCACATTCATCGTCATGTTTGATTTTACATACTAGTGATTTAAAAACAGCTGGAATCTGGAGTTCTAGATTCATGTACACTATATTTatgaaagtatgtggacaccccctcAAAAAAATTTatggattaggctatttcagccacacccgttgcagaCAGGTGTACAAAGtccagcacacagccatgcaatctccatagagaaacattggcagtagaatggccttactgaagagctcagttactttcaatgtggcaccgtcatgatgccacctttccaacaaatcagttcgtcaaatttaaGCCCTGCTACAGCttcccccggtcaactgtaagtgctgttactgtgaagtggaaacgtcttggaGAATAAAAaaaacggctcagctgcgaagtggttggccacacaagctcacagagtgCTGAATTGCGTAAAAATAGTCtatccttggttgcaacactcgctactgagttccaaactgcctctggaagcaacatcagcacaagaactgttcgtcaagaccttcatgaaatgagtttccatggcagagcagccgcacacaagcctaagatcaccatgcgcaatgacaAGCGTCGGCTGAAGTGGTATAAAGcccccattggactctggagcagtggaaacgctttcttAATTAAGAGTGATGTTTCGTGCTTCACCATTTGTCAGCCCGACGGACGAATCAGGGTTTGGTGGATGCAAGGAGAACGTTAATAAATAGTTGTAGGATTTTCTGAAGCAGACTAGAGACTTAAACAGCTTTGCTTTTTACTCAcagtagaaaatagtttttttattaGGGCGAAGTGTACAGTTGAACAGATCTGTAGCCAGGCTAATCTACAGCTATCCTCACAATAGAACATTGTTTTCTACAGTAAATCAGAATGGTTAAGCTAGCTCGCCTACAGTAAATCAGAAGCTAGCTAGCCTACAGTAAATCAGAAGCTAGCTAGCCTACAGTAAATCAGAAGCTAGCTAGCCTACAGTAAATCAGACCATGCTGTACTCAGGGTTCCTTAGCAGAACATTACAACATCTCCTGCTGAGAATGTCTCTCCTTTCCATCTGTTCCTGTCAGAACTGCAGAGCCGC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1806999 True 1628 TUCP 0.43 1 70759159 70760786

Neighbor

gene id symbol gene type direction distance location
LOC118941215 NA coding downstream 24358 70733633 ~ 70735514 (-)
LOC118941013 necab1 coding downstream 40755 70645943 ~ 70718404 (-)
LOC118941214 necab1 coding downstream 151108 70568365 ~ 70627332 (-)
lrrc69 lrrc69 coding downstream 268258 70458965 ~ 70490901 (-)
cibar1 fam92a1 coding downstream 932318 69784536 ~ 69826841 (-)
LOC110496779 LOC106589151 coding upstream 15932 70776718 ~ 70789671 (-)
LOC110518582 csmd2 coding upstream 560743 71321529 ~ 71779541 (-)
LOC118941218 LOC106589160 coding upstream 1043535 71804321 ~ 71821112 (-)
LOC118941015 LOC103363662 coding upstream 1086647 71847433 ~ 71874670 (-)
LOC118941016 NA coding upstream 1182442 71943228 ~ 71944243 (-)
G1578943 NA non-coding downstream 8839 70742739 ~ 70750320 (-)
G1578942 NA non-coding downstream 13796 70742572 ~ 70745363 (-)
G1578880 NA non-coding downstream 45356 70713360 ~ 70713803 (-)
G1578863 NA non-coding downstream 83318 70670535 ~ 70675841 (-)
G1578950 NA non-coding upstream 1964 70762750 ~ 70763477 (-)
G1578951 NA non-coding upstream 3343 70764129 ~ 70766562 (-)
G1578952 NA non-coding upstream 7231 70768017 ~ 70768288 (-)
G1578953 LOC106581475 non-coding upstream 7619 70768405 ~ 70768759 (-)
G1578931 NA non-coding upstream 13749 70774535 ~ 70774945 (-)
G1578949 NA other downstream 2484 70754159 ~ 70756675 (-)
G1578765 NA other downstream 332582 70426220 ~ 70426577 (-)
G1578607 NA other downstream 371684 70384835 ~ 70387475 (-)
G1578414 NA other downstream 673367 70085373 ~ 70085792 (-)
G1578963 NA other upstream 37009 70797795 ~ 70798639 (-)
G1578970 NA other upstream 50239 70811025 ~ 70812510 (-)
G1579147 NA other upstream 393051 71153837 ~ 71154277 (-)
G1579220 NA other upstream 481905 71242691 ~ 71243093 (-)

Expression


Co-expression Network