G1579639


Basic Information

Item Value
gene id G1579639
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 71407428 ~ 71408884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1807857
ccaactaactctcagtaaccaactcagaccaggcactcagaatgggtccagcTAACTCTCAggaaccaactcagaccaggcactcagaatgggtccaactaactctcagtaaccaactcagaccaggcactcagaatgggcccaactaactctcagtaaccaactcagaccaggcactcagaatgggtccaggTAACTCTCAggaaccaactcagaccaggcactcagaatgggtccaactaactctcagtaaccaactcagaccaggcactgagaatgggtccaactaactctcagtaaccaactcagaccaggcaatCAGAATGGGTCCagctaactctcagtaaccaactcagaccaggctgtcagaatgggtccaactaactctcagtaaccaactcaggccAGGCGCTCcaaatgggtcctatcagtaacaaactcagaccaggctgtcagaatggacccaactaactctcagtaaccaactcagaccaggctgtcagaatgggtccaactaactctcagtaaccaactcaggccAGGCGCTCcaaatgggtcctatcagtaacaaactcagaccaggctgtcagaatggacccaactaactctcagtaaccaactcagaccaggctgtcagaatttGTCCAACTaaatctcagtaaccaactcagaccaggcactcagaatgggtcctactaactctcagtaaccaactcagaccaagcactcagaatgggtcgtatcagtaaccaactcagaccaggcactgagaatgggtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1807857 True 780 lncRNA 0.50 2 71407428 71408884

Neighbor

gene id symbol gene type direction distance location
LOC110496779 LOC106589151 coding downstream 617757 70776718 ~ 70789671 (-)
LOC118941215 NA coding downstream 672627 70733633 ~ 70735514 (-)
LOC118941013 necab1 coding downstream 689024 70645943 ~ 70718404 (-)
LOC118941214 necab1 coding downstream 799377 70568365 ~ 70627332 (-)
lrrc69 lrrc69 coding downstream 916527 70458965 ~ 70490901 (-)
LOC118941218 LOC106589160 coding upstream 395437 71804321 ~ 71821112 (-)
LOC118941015 LOC103363662 coding upstream 438549 71847433 ~ 71874670 (-)
LOC118941016 NA coding upstream 534344 71943228 ~ 71944243 (-)
csmd1a csmd2 coding upstream 607037 72015921 ~ 72236753 (-)
LOC110496752 LOC106589094 coding upstream 1609912 73006005 ~ 73131439 (-)
G1579638 NA non-coding downstream 27134 71380068 ~ 71380294 (-)
G1579637 NA non-coding downstream 43800 71363282 ~ 71363628 (-)
G1579628 NA non-coding downstream 46218 71354198 ~ 71361210 (-)
G1579627 NA non-coding downstream 53329 71353884 ~ 71354099 (-)
G1579626 NA non-coding downstream 61431 71345765 ~ 71345997 (-)
G1579644 NA non-coding upstream 4674 71413558 ~ 71414162 (-)
G1579651 NA non-coding upstream 52857 71461741 ~ 71461945 (-)
G1579652 NA non-coding upstream 53126 71462010 ~ 71462212 (-)
G1579655 NA non-coding upstream 60442 71469326 ~ 71469540 (-)
G1579656 NA non-coding upstream 60816 71469700 ~ 71480044 (-)
G1579220 NA other downstream 164335 71242691 ~ 71243093 (-)
G1579147 NA other downstream 253151 71153837 ~ 71154277 (-)
G1578970 NA other downstream 594918 70811025 ~ 70812510 (-)
G1578963 NA other downstream 608789 70797795 ~ 70798639 (-)
G1578948 NA other downstream 646642 70759159 ~ 70760786 (-)
LOC110518582 csmd2 other upstream 89 71321529 ~ 71779541 (-)
G1579672 NA other upstream 108985 71517869 ~ 71518469 (-)
G1579715 NA other upstream 227603 71636487 ~ 71638132 (-)
G1579954 NA other upstream 805290 72214174 ~ 72214789 (-)

Expression


Co-expression Network