G1579741


Basic Information

Item Value
gene id G1579741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 71705869 ~ 71706475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1807977
ggtcagggcaggatgATCAGACAGGtgggaaagtagtccagagtccGGCAGGAGTCAAATCCAGGAAGACGATCAAAaggggaaaaacacgctggttgacttgactaacatacaggacaaactggcacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacaaggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggatacatacactggtacagagagacaggaaacacagggatacatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggatacatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggagaaatacactggtacagagagacaggaaacacagggataaatacactggg
>TU1807979
ggtcagggcaggatgATCAGACAGGtgggaaagtagtccagagtccGGCAGGAGTCAAATCCAGGAAGACGATCAAAaggggaaaaacacgctggttgacttgactaacatacaggacaaactggcacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacaaggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagtgagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggatacatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggagaaatacactggtacagagagacaggaaacacagggataaatacactggg
>TU1807980
ggtcagggcaggatgATCAGACAGGtgggaaagtagtccagagtccGGCAGGAGTCAAATCCAGGAAGACGATCAAAaggggaaaaacacgctggttgacttgactaacatacaggacaaactggcacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacaaggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggataaatacactggtacagtgagacaggaaacacagggataaatacactggtacagagagacaggaaacacagggagaaatacactggtacagagagacaggaaacacagggataaatacactggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1807977 False 570 lncRNA 0.46 2 71705869 71706475
TU1807979 False 459 lncRNA 0.46 2 71705869 71706475
TU1807980 True 385 lncRNA 0.46 2 71705869 71706475

Neighbor

gene id symbol gene type direction distance location
LOC110496779 LOC106589151 coding downstream 916198 70776718 ~ 70789671 (-)
LOC118941215 NA coding downstream 971068 70733633 ~ 70735514 (-)
LOC118941013 necab1 coding downstream 987465 70645943 ~ 70718404 (-)
LOC118941214 necab1 coding downstream 1097818 70568365 ~ 70627332 (-)
lrrc69 lrrc69 coding downstream 1214968 70458965 ~ 70490901 (-)
LOC118941218 LOC106589160 coding upstream 97846 71804321 ~ 71821112 (-)
LOC118941015 LOC103363662 coding upstream 140958 71847433 ~ 71874670 (-)
LOC118941016 NA coding upstream 236753 71943228 ~ 71944243 (-)
csmd1a csmd2 coding upstream 309446 72015921 ~ 72236753 (-)
LOC110496752 LOC106589094 coding upstream 1312321 73006005 ~ 73131439 (-)
G1579733 NA non-coding downstream 11712 71691114 ~ 71694157 (-)
G1579722 NA non-coding downstream 50130 71655128 ~ 71655739 (-)
G1579721 NA non-coding downstream 51191 71654452 ~ 71654678 (-)
G1579720 NA non-coding downstream 51859 71653309 ~ 71654010 (-)
G1579714 NA non-coding downstream 70063 71635584 ~ 71635806 (-)
G1579749 NA non-coding upstream 25047 71731522 ~ 71732926 (-)
G1579762 NA non-coding upstream 57208 71763683 ~ 71763972 (-)
G1579781 NA non-coding upstream 94602 71801077 ~ 71801564 (-)
G1579797 NA non-coding upstream 145498 71851973 ~ 71852850 (-)
G1579799 NA non-coding upstream 151122 71857597 ~ 71858369 (-)
G1579715 NA other downstream 67737 71636487 ~ 71638132 (-)
G1579672 NA other downstream 187400 71517869 ~ 71518469 (-)
LOC110518582 csmd2 other downstream 278085 71321529 ~ 71779541 (-)
G1579220 NA other downstream 462776 71242691 ~ 71243093 (-)
G1579147 NA other downstream 551592 71153837 ~ 71154277 (-)
G1579954 NA other upstream 507699 72214174 ~ 72214789 (-)
G1580625 NA other upstream 1341358 73047833 ~ 73048686 (-)
G1580844 NA other upstream 1818807 73525282 ~ 73525595 (-)
LOC110496905 LOC106593151 other upstream 2117556 73822008 ~ 74115567 (-)

Expression


Co-expression Network