G1579511



Basic Information


Item Value
gene id G1579511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72006247 ~ 72007776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1807693
GCCAAGCGAGCGAATCAGAATCCAGCACCATGCACTCAACGCTAAATTGGCTGGCATTGAGCGTTATTTACATTGCCTCAGAAGGGGGAGGAAATCAATGTGGATAAAAATACTATCGTGGTAGAATATTGTGTTCCctcagaatcaaatcaaatcaaagggtATTTGTCacgtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtggacctcacagtgaaatgctgaatacaacaggtgtagtagaccagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaaaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaaaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtatagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1807693 True 1116 lncRNA 0.41 2 72006247 72007776

Neighbor


gene id symbol gene type direction distance location
LOC118941017 NA coding upstream 60071 71944242 ~ 71946176 (+)
LOC118940973 NA coding upstream 796604 71208388 ~ 71209643 (+)
LOC118941014 NA coding upstream 947092 71058367 ~ 71059155 (+)
LOC110515436 LOC106570762 coding upstream 1053452 70857223 ~ 70952795 (+)
acot13 acot13 coding upstream 1228895 70774594 ~ 70777352 (+)
LOC118941219 LOC103143335 coding downstream 885078 72892854 ~ 72909233 (+)
yars1 yars coding downstream 998120 73005896 ~ 73016843 (+)
sync sync coding downstream 1123023 73130799 ~ 73174920 (+)
LOC110496903 LOC106570720 coding downstream 1194023 73201799 ~ 73281251 (+)
LOC110496759 nupl2 coding downstream 1388669 73396445 ~ 73418514 (+)
G1579505 NA non-coding upstream 22102 71983872 ~ 71984145 (+)
G1579502 NA non-coding upstream 34712 71970737 ~ 71971535 (+)
G1579483 NA non-coding upstream 84689 71921327 ~ 71921558 (+)
G1579481 NA non-coding upstream 90080 71912915 ~ 71916167 (+)
G1579479 NA non-coding upstream 94636 71911376 ~ 71911611 (+)
G1579516 NA non-coding downstream 9428 72017204 ~ 72018857 (+)
G1579533 NA non-coding downstream 42980 72050756 ~ 72050985 (+)
G1579539 NA non-coding downstream 49251 72057027 ~ 72057232 (+)
G1579543 NA non-coding downstream 57721 72065497 ~ 72065725 (+)
G1579544 NA non-coding downstream 62772 72070548 ~ 72071553 (+)
G1578630 NA other upstream 1586974 70418859 ~ 70419273 (+)
LOC110519153 runx1t1 other upstream 1707122 70192261 ~ 70385585 (+)
G1577699 NA other upstream 2241994 69762713 ~ 69764253 (+)
G1577567 NA other upstream 2389904 69615279 ~ 69616967 (+)
si:ch211-215i13.3 LOC106589127 other upstream 2631330 69360411 ~ 69374917 (+)
G1579579 NA other downstream 130381 72138157 ~ 72138592 (+)
G1579615 NA other downstream 219555 72227331 ~ 72227659 (+)
G1579986 NA other downstream 254640 72262416 ~ 72263220 (+)
G1580222 NA other downstream 588288 72596064 ~ 72596671 (+)

Expression



Co-expression Network