G1579854


Basic Information

Item Value
gene id G1579854
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72006723 ~ 72009799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1808117
actacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactacacatgttgtattcagcatttcactgtaaggtctactatacctgttgtattcatcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtttactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctact
>TU1808121
actacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactacacatgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtccactacacctgttgtattcagcatttcactgtaaggtctacgacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtttactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctact
>TU1808122
actacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactacacatgttgtattcagcatttcactgtaaggtctactatacctgttgtattcatcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtttactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactggtctactacacctgttgtattcagcatttcactgtgaggtccactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactatacatgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtttactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctact
>TU1808119
actacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctactacacatgttgtattcagcatttcactgtaaggtctactatacctgttgtattcatcatttcactgtaaggtctactacacatgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1808117 False 535 lncRNA 0.39 3 72006723 72009799
TU1808121 False 1295 lncRNA 0.40 2 72006723 72009799
TU1808122 False 1177 lncRNA 0.39 3 72006723 72009799
TU1808119 True 346 lncRNA 0.38 2 72007972 72009799

Neighbor

gene id symbol gene type direction distance location
LOC118941016 NA coding downstream 62480 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 132053 71847433 ~ 71874670 (-)
LOC118941218 LOC106589160 coding downstream 185611 71804321 ~ 71821112 (-)
LOC110518582 csmd2 coding downstream 227182 71321529 ~ 71779541 (-)
LOC110496779 LOC106589151 coding downstream 1217052 70776718 ~ 70789671 (-)
csmd1a csmd2 coding upstream 6122 72015921 ~ 72236753 (-)
LOC110496752 LOC106589094 coding upstream 1008997 73006005 ~ 73131439 (-)
LOC118941220 NA coding upstream 1069605 73079404 ~ 73081896 (-)
LOC110517586 LOC106589098 coding upstream 1294572 73304371 ~ 73363731 (-)
LOC110496760 NA coding upstream 1378962 73388761 ~ 73393698 (-)
G1579831 NA non-coding downstream 68965 71936480 ~ 71937758 (-)
G1579830 NA non-coding downstream 71066 71935452 ~ 71935657 (-)
G1579827 NA non-coding downstream 77935 71928312 ~ 71928788 (-)
G1579811 NA non-coding downstream 114915 71891064 ~ 71891808 (-)
G1579799 NA non-coding downstream 148354 71857597 ~ 71858369 (-)
G1579855 NA non-coding upstream 6629 72016428 ~ 72018818 (-)
G1579878 NA non-coding upstream 46162 72055961 ~ 72056514 (-)
G1579879 NA non-coding upstream 47303 72057102 ~ 72057334 (-)
G1579901 NA non-coding upstream 92838 72102637 ~ 72103689 (-)
G1579915 NA non-coding upstream 122015 72131814 ~ 72132018 (-)
G1579715 NA other downstream 368591 71636487 ~ 71638132 (-)
G1579672 NA other downstream 488254 71517869 ~ 71518469 (-)
G1579220 NA other downstream 763630 71242691 ~ 71243093 (-)
G1579147 NA other downstream 852446 71153837 ~ 71154277 (-)
G1579954 NA other upstream 204375 72214174 ~ 72214789 (-)
G1580625 NA other upstream 1038034 73047833 ~ 73048686 (-)
G1580844 NA other upstream 1515483 73525282 ~ 73525595 (-)
LOC110496905 LOC106593151 other upstream 1814232 73822008 ~ 74115567 (-)

Expression


Co-expression Network