G1580014


Basic Information

Item Value
gene id G1580014
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72290620 ~ 72290972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1808294
gtacaccctgtatatagcctacacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctctaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgta
>TU1808295
gtacaccctgtatatagcctacacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctctaccgtaacaccctgtatatagcctccacattgactctaccgtaataccctgtatatagcctccacattgactctgtaccgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1808294 False 314 lncRNA 0.45 2 72290620 72290972
TU1808295 True 195 lncRNA 0.45 2 72290620 72290972

Neighbor

gene id symbol gene type direction distance location
csmd1a csmd2 coding downstream 53867 72015921 ~ 72236753 (-)
LOC118941016 NA coding downstream 346377 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 415950 71847433 ~ 71874670 (-)
LOC118941218 LOC106589160 coding downstream 469508 71804321 ~ 71821112 (-)
LOC110518582 csmd2 coding downstream 511079 71321529 ~ 71779541 (-)
LOC110496752 LOC106589094 coding upstream 727824 73006005 ~ 73131439 (-)
LOC118941220 NA coding upstream 788432 73079404 ~ 73081896 (-)
LOC110517586 LOC106589098 coding upstream 1013399 73304371 ~ 73363731 (-)
LOC110496760 NA coding upstream 1097789 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 1142743 73433715 ~ 73445162 (-)
G1580006 NA non-coding downstream 5305 72285084 ~ 72285315 (-)
G1580004 NA non-coding downstream 6565 72283599 ~ 72284055 (-)
G1579989 NA non-coding downstream 22033 72268367 ~ 72268587 (-)
G1579987 NA non-coding downstream 27527 72262769 ~ 72263093 (-)
G1579982 LOC106613263 non-coding downstream 31779 72258616 ~ 72258841 (-)
G1580039 NA non-coding upstream 30059 72321031 ~ 72321421 (-)
G1580048 NA non-coding upstream 37648 72328620 ~ 72328904 (-)
G1580075 NA non-coding upstream 77131 72368103 ~ 72368310 (-)
G1580085 NA non-coding upstream 84164 72375136 ~ 72375814 (-)
G1580102 NA non-coding upstream 106138 72397110 ~ 72397348 (-)
G1579954 NA other downstream 75831 72214174 ~ 72214789 (-)
G1579715 NA other downstream 652488 71636487 ~ 71638132 (-)
G1579672 NA other downstream 772151 71517869 ~ 71518469 (-)
G1579220 NA other downstream 1047527 71242691 ~ 71243093 (-)
G1580625 NA other upstream 756861 73047833 ~ 73048686 (-)
G1580844 NA other upstream 1234310 73525282 ~ 73525595 (-)
LOC110496905 LOC106593151 other upstream 1533059 73822008 ~ 74115567 (-)
G1581344 LOC106589111 other upstream 1866333 74157305 ~ 74157747 (-)

Expression


Co-expression Network