G1580304


Basic Information

Item Value
gene id G1580304
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72708548 ~ 72717109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1808640
gtaccggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggtattacggtacagagtcaatgtgaaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggtgtactggtacatagtcaatgtggaggctatatacagggtgtaccggtacagagtcaatgtggaggctatatacagggtgttatggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggtgttatggtacagagtcaatgtggaggctatatacagggggtacctgtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1808640 True 543 lncRNA 0.47 2 72708548 72717109

Neighbor

gene id symbol gene type direction distance location
csmd1a csmd2 coding downstream 471795 72015921 ~ 72236753 (-)
LOC118941016 NA coding downstream 764305 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 833878 71847433 ~ 71874670 (-)
LOC118941218 LOC106589160 coding downstream 887436 71804321 ~ 71821112 (-)
LOC110518582 csmd2 coding downstream 929007 71321529 ~ 71779541 (-)
LOC110496752 LOC106589094 coding upstream 301687 73006005 ~ 73131439 (-)
LOC118941220 NA coding upstream 362295 73079404 ~ 73081896 (-)
LOC110517586 LOC106589098 coding upstream 587262 73304371 ~ 73363731 (-)
LOC110496760 NA coding upstream 671652 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 716606 73433715 ~ 73445162 (-)
G1580276 NA non-coding downstream 38974 72669321 ~ 72669574 (-)
G1580271 NA non-coding downstream 47393 72660068 ~ 72661155 (-)
G1580268 NA non-coding downstream 50008 72658325 ~ 72658540 (-)
G1580264 NA non-coding downstream 54913 72652690 ~ 72653635 (-)
G1580263 NA non-coding downstream 57163 72649357 ~ 72651385 (-)
G1580310 NA non-coding upstream 3982 72721091 ~ 72721895 (-)
G1580320 NA non-coding upstream 18133 72735242 ~ 72735442 (-)
G1580323 NA non-coding upstream 22475 72739584 ~ 72739804 (-)
G1580330 NA non-coding upstream 36114 72753223 ~ 72753447 (-)
G1580333 NA non-coding upstream 41298 72758407 ~ 72758683 (-)
G1579954 NA other downstream 493759 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1070416 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1190079 71517869 ~ 71518469 (-)
G1579220 NA other downstream 1465455 71242691 ~ 71243093 (-)
G1580625 NA other upstream 330724 73047833 ~ 73048686 (-)
G1580844 NA other upstream 808173 73525282 ~ 73525595 (-)
LOC110496905 LOC106593151 other upstream 1106922 73822008 ~ 74115567 (-)
G1581344 LOC106589111 other upstream 1440196 74157305 ~ 74157747 (-)

Expression


Co-expression Network