Gene
RNA
| Item | Value |
|---|---|
| gene id | G1580336 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 72760931 ~ 72761428 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1808677 | False | 191 | lncRNA | 0.44 | 2 | 72760931 | 72761205 |
| TU1808678 | True | 218 | lncRNA | 0.42 | 3 | 72760931 | 72761428 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| csmd1a | csmd2 | coding | downstream | 524178 | 72015921 ~ 72236753 (-) |
| LOC118941016 | NA | coding | downstream | 816688 | 71943228 ~ 71944243 (-) |
| LOC118941015 | LOC103363662 | coding | downstream | 886261 | 71847433 ~ 71874670 (-) |
| LOC118941218 | LOC106589160 | coding | downstream | 939819 | 71804321 ~ 71821112 (-) |
| LOC110518582 | csmd2 | coding | downstream | 981390 | 71321529 ~ 71779541 (-) |
| LOC110496752 | LOC106589094 | coding | upstream | 257368 | 73006005 ~ 73131439 (-) |
| LOC118941220 | NA | coding | upstream | 317976 | 73079404 ~ 73081896 (-) |
| LOC110517586 | LOC106589098 | coding | upstream | 542943 | 73304371 ~ 73363731 (-) |
| LOC110496760 | NA | coding | upstream | 627333 | 73388761 ~ 73393698 (-) |
| LOC110496758 | LOC106530873 | coding | upstream | 672287 | 73433715 ~ 73445162 (-) |
| G1580333 | NA | non-coding | downstream | 2248 | 72758407 ~ 72758683 (-) |
| G1580330 | NA | non-coding | downstream | 7484 | 72753223 ~ 72753447 (-) |
| G1580323 | NA | non-coding | downstream | 21127 | 72739584 ~ 72739804 (-) |
| G1580320 | NA | non-coding | downstream | 25489 | 72735242 ~ 72735442 (-) |
| G1580310 | NA | non-coding | downstream | 39036 | 72721091 ~ 72721895 (-) |
| G1580393 | NA | non-coding | upstream | 48693 | 72810121 ~ 72810615 (-) |
| G1580449 | NA | non-coding | upstream | 126866 | 72888294 ~ 72888628 (-) |
| G1580444 | NA | non-coding | upstream | 149675 | 72911103 ~ 72911854 (-) |
| G1580605 | NA | non-coding | upstream | 200607 | 72962035 ~ 73004146 (-) |
| G1579954 | NA | other | downstream | 546142 | 72214174 ~ 72214789 (-) |
| G1579715 | NA | other | downstream | 1122799 | 71636487 ~ 71638132 (-) |
| G1579672 | NA | other | downstream | 1242462 | 71517869 ~ 71518469 (-) |
| G1579220 | NA | other | downstream | 1517838 | 71242691 ~ 71243093 (-) |
| G1580625 | NA | other | upstream | 286405 | 73047833 ~ 73048686 (-) |
| G1580844 | NA | other | upstream | 763854 | 73525282 ~ 73525595 (-) |
| LOC110496905 | LOC106593151 | other | upstream | 1062603 | 73822008 ~ 74115567 (-) |
| G1581344 | LOC106589111 | other | upstream | 1395877 | 74157305 ~ 74157747 (-) |
