G1580524


Basic Information

Item Value
gene id G1580524
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73291116 ~ 73294312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1808909
aaatcaagatAAATTTACCATTTTATTTATGAAGTTGATATTAAGTGTACATTTAATACACATTTGTACTTTAGTAAACCTAACAATATTTACGGcatggttactttgaagaatttatTGTATTTAATGATATAACGATATGATACAGAGCCTACAGAAAATACTCATGGAACGTTGACGGATTCTACATTTTCTAGTGTTACAGAATTTATTGTATTTAATGATATAACGATATGATGACGATAATgatgatttaatccatttagaaACACAGAgctttcagaaaatattcatagcCGTTGGCAGATTCTACATTTTCTACAGCCTGAATAAATATTTGTAATTCTTCCATCGACACACAATAACCTATAATGGCAAATTGAAaatatacgttttttttttacaaatgtcatcaaatgtattgaaaattaaatacagaaatgtcacatttacataagtattcacaaccccctgagtcaatgcatgttagaataTTTTAccctgagtctttctgggtaagtctctaagagttttacacacctggattgtacgaAGTTttctaattattatttttttttaattattcaaactctgtcaagttggttgttgatcattgctagacagacattttcaagtcttgacataAATGTCCATGcctatttaagtcaaaactgtaactaggccactctgatacattcaatgtcgtcttggaaagcaactcctgtgtatatttggctttgtgtttaaggttattgtcctgctgaaaggtgaatttgcctCCCAGTGTCTGtgctaggattttgcctgtgcttagctctagtTTGTATATTTCTATCCCAAAAACAATTCCTTAgtctttgccgatgacaagcatacccataacatgatgcagccaccaccatgcttgaaaatatgaagagttgtACTCAGTGATGTTTTGTGTTGGATTTACCCTAAACATAACACGTTGTATTCATGACATAAAgctaatttctttgccacatttttttgcaattttactttagtgccttaatgcaaacatgatgcatgtttgGGAATATTGTATTCTGTttaggctttcttcttttcattAAGtcaatattgtggagtaactacaatgttgttgatccatcctcagttctctccgatcacagccattaaactctgtaactgttttaaagtcaccattgacctcatggtgaaatccctgagtggtttccttcctctccggcaactgagttaggaaggacccctttatctttgtagtgactgggtgtattgaaacaccatccaaagtgtaattaaaaagttccccatgctcaaagggatattcaatgttatcaatgtctgctttttggtTTTTTTACCcttccaataggtgcccttctttgtgaggcattggaaaacctccctggtctttgtcgaTGAGTCTGTGTTtggaattcactgctcgactgggggaccttacagataattgtatgtgtgggggtacagagattaattattcatttaaaatgatgtttaaacactattattgcacacagagtcccaTGCATCTTATTATGGGACTTATTaaagcacatgtttactcctgaacgtgTTTatgtttgccataacaaaggggtcgaatacttattgactcaagattggcttttaattgtttattaatttgcaaaaatgtctacaaatTTCTATATTcctctttgacattatggggttattgtgtgtaggccaatgaaACAaaataaattcaggctgtaacaaaaactAAATCTAAGAAACGGGgttgtgaacactttctgaaggcactgtgtcaTGGGGAAATCTGTGAATTGAAAAGAAATATGAACAATTGTATTTAATTGTAGCATTAATTTAGTCTTCCATCCTACTGATATAGAGTTCTTCTTCTGCCAATAATAATAACGTATGTTCTTGTGTCAGAGGACTTAGTTATGTCTGTTAGACCTTGACTAGTAGGGCTGGCCTAGATACCTCTGACTGTTTTCTATTCCAATGAGAACAGACATCACAACAGAGTGTGAACGGCAGGGGCACTCCTTTCACAAATCAGAACAATGACATAGATATTGAACATTTTAACATAGACGCTGCCATAGTGTTGAAGAACAAAACATTGGTCTAGCCCATTATTGAGAGTACCGTACAAAGTATCACTAGGCAGCATTTAAATCAAACTCTTGATAACATCTAGTTCAGCAGAAATCATATCAAATTTTACTGTTTTCAGATGCTCAGCACCATTGACTCACAAAGCACTCAATGCATTGAGAACAGAGACATTTTTTTACGATGAACCCTAAACTTTTCCATGAGAAAAATCAAAGAGACAAGTGGTGTGTGCTTGTCAACGATAAGAATATTgtgggttttttttttctctctctctctaattttactgctgctgctgtaaATGCTGTTTGTCAACATTGTCAAATGTTCTAATCGTCGTTAAATCACAGCACAAGTTCCTGAGCAGCCATTTTGTCTATAAACTTCTGACTGTCTGTCACAAAACACAGATGAGAATCTCCCAGAGCCATGTTGCAGACCACAGTAGCAAACCCCCTTTAAAGACAGCCTTCACATGGACGTCCCCAGCCAGGGAACCTCCTCTCAAAAAAGGCAGCAACGTTTCTGATAATCTTTTTTGGGGTTATTTCGATTATCTAGATTAAAATGCTTCAGCCACACTTATTCACACACATATAAATGTAT
>TU1808908
tacaaatgtcatcaaatgtattgaaaattaaatacagaaatgtcacatttacataagtattcacaaccccctgagtcaatgcatgttagaataTTTTAccctgagtctttctgggtaagtctctaagagttttacacacctggattgtacgaAGTTttctaattattatttttttttaattattcaaactctgtcaagttggttgttgatcattgctagacagacattttcaagtcttgacataAATGTCCATGcctatttaagtcaaaactgtaactaggccactctgatacattcaatgtcgtcttggaaagcaactcctgtgtatatttggctttgtgtttaaggttattgtcctgctgaaaggtgaatttgcctCCCAGTGTCTGtgctaggattttgcctgtgcttagctctagtTTGTATATTTCTATCCCAAAAACAATTCCTTAgtctttgccgatgacaagcatacccataacatgatgcagccaccaccatgcttgaaaatatgaagagttgtACTCAGTGATGTTTTGTGTTGGATTTACCCTAAACATAACACGTTGTATTCATGACATAAAgctaatttctttgccacatttttttgcaattttactttagtgccttaatgcaaacatgatgcatgtttgGGAATATTGTATTCTGTttaggctttcttcttttcattAAGtcaatattgtggagtaactacaatgttgttgatccatcctcagttctctccgatcacagccattaaactctgtaactgttttaaagtcaccattgacctcatggtgaaatccctgagtggtttccttcctctccggcaactgagttaggaaggacccctttatctttgtagtgactgggtgtattgaaacaccatccaaagtgtaattaaaaagttccccatgctcaaagggatattcaatgttatcaatgtctgctttttggtTTTTTTACCcttccaataggtgcccttctttgtgaggcattggaaaacctccctggtctttgtcgaTGAGTCTGTGTTtggaattcactgctcgactgggggaccttacagataattgtatgtgtgggggtacagagattaattattcatttaaaatgatgtttaaacactattattgcacacagagtcccaTGCATCTTATTATGGGACTTATTaaagcacatgtttactcctgaacgtgTTTatgtttgccataacaaaggggtcgaatacttattgactcaagattggcttttaattgtttattaatttgcaaaaatgtctacaaatTTCTATATTcctctttgacattatggggttattgtgtgtaggccaatgaaACAaaataaattcaggctgtaacaaaaactAAATCTAAGAAACGGGgttgtgaacactttctgaaggcactgtgtcaTGGGGAAATCTGTGAATTGAAAAGAAATATGAACAATTGTATTTAATTGTAGCATTAATTTAGTCTTCCATCCTACTGATATAGAGTTCTTCTTCTGCCAATAATAATAACGTATGTTCTTGTGTCAGAGGACTTAGTTATGTCTGTTAGACCTTGACTAGTAGGGCTGGCCTAGATACCTCTGACTGTTTTCTATTCCAATGAGAACAGACATCACAACAGAGTGTGAACGGCAGGGGCACTCCTTTCACAAATCAGAACAATGACATAGATATTGAACATTTTAACATAGACGCTGCCATAGTGTTGAAGAACAAAACATTGGTCTAGCCCATTATTGAGAGTACCGTACAAAGTATCACTAGGCAGCATTTAAATCAAACTCTTGATAACATCTAGTTCAGCAGAAATCATATCAAATTTTACTGTTTTCAGATGCTCAGCACCATTGACTCACAAAGCACTCAATGCATTGAGAACAGAGACATTTTTTTACGATGAACCCTAAACTTTTCCATGAGAAAAATCAAAGAGACAAGTGGTGTGTGCTTGTCAACGATAAGAATATTgtgggttttttttttctctctctctctaattttactgctgctgctgtaaATGCTGTTTGTCAACATTGTCAAATGTTCTAATCGTCGTTAAATCACAGCACAAGTTCCTGAGCAGCCATTTTGTCTATAAACTTCTGACTGTCTGTCACAAAACACAGATGAGAATCTCCCAGAGCCATGTTGCAGACCACAGTAGCAAACCCCCTTTAAAGACAGCCTTCACATGGACGTCCCCAGCCAGGGAACCTCCTCTCAAAAAAGGCAGCAACGTTTCTGATAATCTTTTTTGGGGTTATTTCGATTATCTAGATTAAAATGCTTCAGCCACACTTATTCACACACATATAAATGTATGTTGCCCTGCTATCAACTGTAAAGGTAGATTCTTAGGGAAcatggtgtgtgggggggggggggggtctttactTATTGGTTTGGACTATCTTCTAGACTCCATGAGACATTCACATACTGAGTTTGAAAAGAGCAGCAGTGTAGCAGATTGTCTGATTGAAGGATGGCAAAGACGAGGAGCTGTACTTTTATACCTGATGCTTTGTAAATGTTTTCTATGTGCAGTATTTGATCATGTAAAgctggtatttttttttttttgtggtttgTAATGCTGCATAATTGATTACTTAGGGTGCACGTAGTTTTTTTGTACGAAAAATTGTACCAAATGGAtgaaaaataaacaacaacaacaacaacaataatacaaAAAGTTCCACGTTTTTCGGGTTCCTGTCATTTGCCCCTTTACCGTCTGGACTCAAAAGTCAATAAAGTTTTATTCGAATCACCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1808909 False 2739 lncRNA 0.36 1 73291116 73293854
TU1808908 True 2796 lncRNA 0.37 1 73291517 73294312
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Neighbor

gene id symbol gene type direction distance location
LOC110496903 LOC106570720 coding upstream 9865 73201799 ~ 73281251 (+)
sync sync coding upstream 116196 73130799 ~ 73174920 (+)
yars1 yars coding upstream 274273 73005896 ~ 73016843 (+)
LOC118941219 LOC103143335 coding upstream 381883 72892854 ~ 72909233 (+)
LOC118941017 NA coding upstream 1344940 71944242 ~ 71946176 (+)
LOC110496759 nupl2 coding downstream 102133 73396445 ~ 73418514 (+)
LOC110496757 LOC102790862 coding downstream 239037 73533349 ~ 73721653 (+)
LOC118941018 NA coding downstream 489122 73783434 ~ 73784213 (+)
LOC110496904 fuca1 coding downstream 495206 73789518 ~ 73801888 (+)
LOC110496761 LOC106589111 coding downstream 853087 74147399 ~ 74159321 (+)
G1580552 NA non-coding upstream 53535 73236940 ~ 73237581 (+)
G1580543 NA non-coding upstream 75440 73208308 ~ 73215676 (+)
G1580542 NA non-coding upstream 87538 73203346 ~ 73203578 (+)
G1580541 NA non-coding upstream 88049 73202689 ~ 73203067 (+)
G1580540 NA non-coding upstream 88826 73202076 ~ 73202290 (+)
G1580567 NA non-coding downstream 1426 73295738 ~ 73296255 (+)
G1580568 NA non-coding downstream 2614 73296926 ~ 73297837 (+)
G1580571 NA non-coding downstream 10171 73304483 ~ 73305990 (+)
G1580577 NA non-coding downstream 34879 73329191 ~ 73331396 (+)
G1580594 NA non-coding downstream 62160 73356472 ~ 73356753 (+)
G1580222 NA other upstream 694445 72596064 ~ 72596671 (+)
G1579986 NA other upstream 1027896 72262416 ~ 72263220 (+)
G1579615 NA other upstream 1063457 72227331 ~ 72227659 (+)
G1579579 NA other upstream 1152524 72138157 ~ 72138592 (+)
G1580586 NA other downstream 48985 73343297 ~ 73343837 (+)
G1580898 NA other downstream 302498 73596810 ~ 73598547 (+)

Expression

G1580524 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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G1580524 Expression in each Bioproject

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G1580524 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network