G1580680


Basic Information

Item Value
gene id G1580680
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73301335 ~ 73370170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1809172
acatcacatcacatgacaccacatcacaccaatcacatcaatcacatcacatgacaccacatcacatcacatgaCACCACATCAAAccccaagtggtaagggtaggcaacaacacatATTCAAGTTTAGCTTTCaaaatgaaacagaaaaccaaacaATTTACCAGAAAATTAAGAGAGATATCTGACTGTTTgtcaaagttagctggctaatttAATCCTGCTTTCTGGAAAGGCCCCTAACTGTGAATCTAGGTCATTGTGAGGACAGAGAATAATTTTTTTGTGTCCAAAActacaacctattccctatttagtgcacctactgtatttagggcccataggggatctgtcaaaagtagtgcactatgtaggaaatagggtggcaTTTAAGGACGTGACCTATTTGACCACCGACAGTCGTGTGTATGATAGTTGTAGAATACACAGGTTTATACATTTGATCGATGTCTATTCGAGATTGTATGACGTGAATGTCTTATCTATGAATGTCTACTATCTGAACAGTATGTCTGTATATTTATTGTCTCTTTGTGCACACGTCTAGGAATGTCTCAGTGACCACACTATGAATGTATGTGTATCTCTGAATTAGGCAAAGGGGTCACTTCCGCCAATTCATGAAATTAAGAATTCTTATAGAAAACAAATTGAAGCATTGAATTAAAATTGAAACGGACAACATTCAACCCCTGAATTGAGAATTGAACTGCGCACAACCCTGCACTGAATCTCTCTTTGTTCTGTCCCCTCTCACTGCCTGACTATCATCTGTAGTTAGTTCAATCTAAAATAACGTCTCTCAATGTCATTAAGTATGCTGTTCCTATGAATGTATTCAGGCTATCTATGTATGAGTATACTATCAGTTTTATTGTCAATTCATCTAAGTGGTTGGTTGTTCTCGGACTGCCTGTCAATGAATGTAAGTCTTTGAATGTTCTCTGGCTGCCTGTCAATGAATGTAAGTCTTTGAATGTTCTCTGGCTGCCTGTCAATGAATGTAAGTCTTTGAATGTTCTCTGGCTGCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1809172 True 1051 lncRNA 0.39 2 73301335 73370170

Neighbor

gene id symbol gene type direction distance location
LOC110496752 LOC106589094 coding downstream 169896 73006005 ~ 73131439 (-)
LOC118941220 NA coding downstream 219439 73079404 ~ 73081896 (-)
csmd1a csmd2 coding downstream 1064582 72015921 ~ 72236753 (-)
LOC118941016 NA coding downstream 1357092 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 1426665 71847433 ~ 71874670 (-)
LOC110496760 NA coding upstream 18591 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 63545 73433715 ~ 73445162 (-)
LOC110489356 LOC106589108 coding upstream 385194 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 451838 73822008 ~ 74115567 (-)
LOC110487813 NA coding upstream 939312 74309482 ~ 74331094 (-)
G1580683 NA non-coding downstream 7029 73291106 ~ 73294306 (-)
G1580686 NA non-coding downstream 10402 73226696 ~ 73290933 (-)
G1580685 NA non-coding downstream 17481 73239657 ~ 73283854 (-)
G1580669 NA non-coding downstream 99354 73201761 ~ 73201981 (-)
G1580665 NA non-coding downstream 110053 73190966 ~ 73191282 (-)
G1580745 NA non-coding upstream 8359 73378529 ~ 73379246 (-)
G1580747 NA non-coding upstream 10329 73380499 ~ 73380781 (-)
G1580748 NA non-coding upstream 11288 73381458 ~ 73381668 (-)
G1580752 NA non-coding upstream 13681 73383851 ~ 73384053 (-)
G1580785 NA non-coding upstream 26299 73396469 ~ 73396718 (-)
G1580625 NA other downstream 252649 73047833 ~ 73048686 (-)
G1579954 NA other downstream 1086546 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1663203 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1782866 71517869 ~ 71518469 (-)
G1580844 NA other upstream 155112 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 787135 74157305 ~ 74157747 (-)
G1581465 NA other upstream 936608 74306778 ~ 74307678 (-)
G1581622 NA other upstream 1076426 74446596 ~ 74446989 (-)

Expression


Co-expression Network