G1580788


Basic Information

Item Value
gene id G1580788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73403195 ~ 73419028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1809313
ATTAAGTCCCTGCAGACCACCAGTAAGTAGCCTGTGATAATGATATCTGCATTACATTCTGCTCCACCTTCATTTTAAAAAGAAAACATTTCAACCAACTGCCAAGGAACTATTACCAGGAACACCCTCTTGGTTGAAACATGACATCATTCAGAATCCATGTGATCAGTAGAATCTAGTCAGATCAAAGGGTTTTTTTACTCATTCTGTCCAGCTCTTTCCTCCATCGGGTCAGTTAAAGAAGAGGAGACAAGACATTTTGCAGATGTCCatggtgggatcagaccaccagcatatcaacaggggggaggtctgagtggtgggatcagaccaccagcatatcaacagggggagGTCTGAGTGGTATCTGTCCCAGGGTGAACCTCTTCCCTCCAAACTCCTTCAGTTCCTCTTCACTCAGCTGGCTCTGGGGGGAGAAGAGACTgtctgctgccccccc
>TU1809315
ATTAAGTCCCTGCAGACCACCAGTAAGTAGCCTGTGATAATGATATCTGCATTACATTCTGCTCCACCTTCATTTTAAAAAGAAAACATTTCAACCAACTGCCAAGGAACTATTACCAGGAACACCCTCTTGGTTGAAACATGACATCATTCAGAATCCATGTGATCAGTAGAATCTAGTCAGATCAAAGGGTTTTTTTACTCATTCTGTCCAGCTCTTTCCTCCATCGGGTCAGTTAAAGAAGAGGAGACAAGACATTTTGCAGATGTCCatggtgggatcagaccaccagcatatcaacaggggggaggtctgagtggtgggatcagaccaccagcatatcaacaggggggaggtctgagtggtgggatcagaccaccagcatatcaacagggggaggtctgagtggtgggatcagaccaccagcatatcaacagggggaGGTCTGAGTGGTATCTGTCCCAGGGTGAACCTCTTCCCTCCAAACTCCTTCAGTTCCTCTTCACTCAGCTGGCTCTGGGGGGAGAAGAGACTgtctgctgccccccc
>TU1809317
AGGAAAACAAATACCACCAACCATAATTAATTAAAACTGAATTTAATGTTGAAACATTAAGTCCCTGCAGACCACCAGTAAGTAGCCTGTGATAATGATATCTGCATTACATTCTGCTCCACCTTCATTTTAAAAAGAAAACATTTCAACCAACTGCCAAGGAACTATTACCAGGAACACCCTCTTGGTTGAAACATGACATCATTCAGAATCCATGTGATCAGTAGAATCTAGTCAGATCAAAGGGTTTTTTTACTCATTCTGTCCAGCTCTTTCCTCCATCGGGTCAGTTAAAGAAGAGGAGACAAGACATTTTGCAGATGTCCatggtgggatcagaccaccagcatatcaacaggggggaggtctgagtggtgggatcagaccaccagcatatcaacagggggagGTCTGAGTGGTATCTGTCCCAGGGTGAACCTCTTCCCTCCAAACTCCTTCAGTTCCTCTTCACTCAGCTGGCTCTGGGGGGAGAAGAGACTgtctgctgccccccc

Function

NR:

description
nucleoporin-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1809313 False 460 lncRNA 0.47 2 73403195 73418973
TU1809315 False 549 lncRNA 0.49 4 73403195 73418973
TU1809317 True 515 lncRNA 0.45 2 73403195 73419028

Neighbor

gene id symbol gene type direction distance location
LOC110496760 NA coding downstream 9497 73388761 ~ 73393698 (-)
LOC110517586 LOC106589098 coding downstream 39464 73304371 ~ 73363731 (-)
LOC110496752 LOC106589094 coding downstream 271756 73006005 ~ 73131439 (-)
LOC118941220 NA coding downstream 321299 73079404 ~ 73081896 (-)
csmd1a csmd2 coding downstream 1166442 72015921 ~ 72236753 (-)
LOC110496758 LOC106530873 coding upstream 14687 73433715 ~ 73445162 (-)
LOC110489356 LOC106589108 coding upstream 336336 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 402980 73822008 ~ 74115567 (-)
LOC110487813 NA coding upstream 890454 74309482 ~ 74331094 (-)
mc5ra LOC106589114 coding upstream 999107 74418135 ~ 74437944 (-)
G1580787 NA non-coding downstream 2702 73400248 ~ 73400493 (-)
G1580785 NA non-coding downstream 6477 73396469 ~ 73396718 (-)
G1580752 NA non-coding downstream 19142 73383851 ~ 73384053 (-)
G1580748 NA non-coding downstream 21527 73381458 ~ 73381668 (-)
G1580747 NA non-coding downstream 22414 73380499 ~ 73380781 (-)
G1580791 NA non-coding upstream 211 73419239 ~ 73424250 (-)
G1580792 NA non-coding upstream 9067 73428095 ~ 73428554 (-)
G1580793 NA non-coding upstream 10284 73429312 ~ 73429589 (-)
G1580794 NA non-coding upstream 11371 73430399 ~ 73430609 (-)
G1580798 NA non-coding upstream 25242 73444270 ~ 73448580 (-)
G1580625 NA other downstream 354509 73047833 ~ 73048686 (-)
G1579954 NA other downstream 1188406 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1765063 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1884726 71517869 ~ 71518469 (-)
G1580844 NA other upstream 106254 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 738277 74157305 ~ 74157747 (-)
G1581465 NA other upstream 887750 74306778 ~ 74307678 (-)
G1581622 NA other upstream 1027568 74446596 ~ 74446989 (-)

Expression


Co-expression Network