G1580791


Basic Information

Item Value
gene id G1580791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73419239 ~ 73424250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1809320
gagaggctatatacagtagagaggttatattcagtagagaggctatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagagggtatagacagtagaggctatatacagtagaggctatatacagtggagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagagggtatagacagtagaggctatatacagtagaggctatataacaGTGGAGAGGctatataacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggctatatacagtagaggatatatacagtagcgaggctatatacagtagagatactacatacagtagagaagttatatacagtagagaggctatatgcagtagaggttatatacagtagaggctatatacagtagagaggctatatacagtagagaggctatatacaagcaCTGGTTAGTCatgctaattgaggtaatatgtacatgtaggtgtagttaaagtgactgtgcatttATGATgaaaagagagtagcagcagcgtaaaagggagggggggcacaatgcaaatagtccgggtagccatttgattacttgttcaggagtcttacggcttgggggtaaaagctgttgagaagcctttttgtccgtggcagagagcagagagaacagtctatgactggggtggctgtggtctttgaccatttttagggccttcctctgacaccgcctggtatagaggtcctggatggcaggaagcttagcctcactaccctctgtagtgccttgcggtcggagaccgagcagttgccataccaggcagctgtagaaccttttgaggatctcagaacccatgccaaatctttttagtttcctgagggggaataggctttgtcgtgctctcttcacaaCTAACTCAGATAAAGGATGATTGGTTAAAAGACAAGGATAAGATGATAGTTGGAACTGtgttgttagatttcagtgcagcctttgatgttattgattataaattGTTATTGAAGAAACTCACTATATATGATTTTACATCACCTGCCATCATATGGTTGGTTGGATAGTTACTTAACCAATAGAACCCAGAGtgtgttcttcaatggaagatTCTCTAACATCAGATGTGTAGTGGGGGTGTCCCTCAGGGCAGTTGCCTTGGGCCAttactcttctctatttttacaaGTTATTTGCCACTGGTCTTAAACACAAAGCTAGAATGATTCAGATGATTCCAAAGCCAGTTTGAGCTCACTGAACCTCTAAATAATGAGTTAGTTACAGAATGGGTGATTCATAACAAACAGGTCTGAAATACATCTGCAACTAAAAGTATTTCATTTGATTAAAAACACTCTCTAAGACCTCAATTGGAGAACATAAAGAATGTGACCACTGAGCCTGTTGAGGAAATTCATCTCCTTGGTTTAACATTGGAGGGTCAGTTATCATGGTTAagactgtcatgactgtcctgatcaggtcaggttacaggagaccacaaccctacagattatctctcaaccccaacagaggaggagagatctgggggttttatgacccctcacgccccttgtaaatctcaggccacagacacattcctttgtcctgttactatgaagaaccagcctcagaacattaaacatgaaatgaaGGAATTTGggacaatggtttccgtcagccacaatggtggtcatgacgatagatgggatatgaaaatgtatgtcatttttgttttgttattagaGGTTAATAGATGATGTTATTACAAAAACATTGTAACATCAACAGTttacctagtatatgtttgatgtttatacattgtacgttgtatggaaaatgtccaaatcaaagagaatgttttggtaaaggtgaaatgtgaagttagttgtctaaaattggatttgagtcaaATCTAGACCTTTCCTCTTAACTAGGTatgcccagagaattgccctaaaaggcggttacgcccacttctgacatgagggtataaaacctgtgagaaAATAATTTACAGATaagactacgtgacccaagctgcagccaaggtctaaaaagtcaacaaACCCAAAACGCAacgcaagtttgaagacaaagaaatatttttctacccaagctacccGCTATGTccaagcgggtgaattcaagtcgaacccCCTAGCATCCAATCCCAGCGAATCATGGTATCGAAaaggtttcattcctatgctgtgagctctgagctacagagctgcctgtcctcagaagaccccttccagagcaagggtgagggaacagactcctaagccaaaaggacactgacatcgtgaggacgACCAGAAAGGTGCGCCGGAGAAGTGCGTCATCGAGAAGCCTGAACGGTCCCCTGAACGGTCCACGCAGAGAATCCTCGGAGGtcttccccacgtaattacatcattatattctgacccataagagcggcagtttggggcaaggctagggttagaatagcacAGCTGACAAATTCacacaaatgtatatttctctcgtgtactttcttttttctctctctctctttgaaatccccattgtgggtgacacgcgccatagtgtgttggcccgttatactaagttctaatcaatagcctatgtgttttgtctatgtgtaccTTTtttcatcattttagctttttagtaaataaatagtaaactaagattggtgtggtacgaactcattggtgagacccgggtccgaactcattggtgagacccgggtctgTGCAGATTCACGGGCTACACGACGTTCAGAACCAGATTGGTAGAGGAAACTGGTTAATTaacggctgttgtaaaatcgatattctgatattcttttgagttaatttgggaaatagaaactcaataaaaaactagttttcccatggtgccccaggttaatgagttaataattgcttgattcagttaatcacgcaattagaattgttttaatattgatgaacaacagtcgtcacattaactaatacaacgtcacgacataTTGACTAAGTTGCTGTGAAGACGGGAAGGTCTGTTATTAAAACATGTTCTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1809320 True 3232 lncRNA 0.41 2 73419239 73424250

Neighbor

gene id symbol gene type direction distance location
LOC110496760 NA coding downstream 25541 73388761 ~ 73393698 (-)
LOC110517586 LOC106589098 coding downstream 55508 73304371 ~ 73363731 (-)
LOC110496752 LOC106589094 coding downstream 287800 73006005 ~ 73131439 (-)
LOC118941220 NA coding downstream 337343 73079404 ~ 73081896 (-)
csmd1a csmd2 coding downstream 1182486 72015921 ~ 72236753 (-)
LOC110496758 LOC106530873 coding upstream 9465 73433715 ~ 73445162 (-)
LOC110489356 LOC106589108 coding upstream 331114 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 397758 73822008 ~ 74115567 (-)
LOC110487813 NA coding upstream 885232 74309482 ~ 74331094 (-)
mc5ra LOC106589114 coding upstream 993885 74418135 ~ 74437944 (-)
G1580788 NA non-coding downstream 211 73403195 ~ 73419028 (-)
G1580787 NA non-coding downstream 18746 73400248 ~ 73400493 (-)
G1580785 NA non-coding downstream 22521 73396469 ~ 73396718 (-)
G1580752 NA non-coding downstream 35186 73383851 ~ 73384053 (-)
G1580748 NA non-coding downstream 37571 73381458 ~ 73381668 (-)
G1580792 NA non-coding upstream 3845 73428095 ~ 73428554 (-)
G1580793 NA non-coding upstream 5062 73429312 ~ 73429589 (-)
G1580794 NA non-coding upstream 6149 73430399 ~ 73430609 (-)
G1580798 NA non-coding upstream 20020 73444270 ~ 73448580 (-)
G1580801 NA non-coding upstream 25315 73449565 ~ 73449790 (-)
G1580625 NA other downstream 370553 73047833 ~ 73048686 (-)
G1579954 NA other downstream 1204450 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1781107 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1900770 71517869 ~ 71518469 (-)
G1580844 NA other upstream 101032 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 733055 74157305 ~ 74157747 (-)
G1581465 NA other upstream 882528 74306778 ~ 74307678 (-)
G1581622 NA other upstream 1022346 74446596 ~ 74446989 (-)

Expression


Co-expression Network