G1580829


Basic Information

Item Value
gene id G1580829
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73496733 ~ 73499678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1809396
ccagaggatggcgggtctttagaggaatgaacctgaccacctgaccaaccagaggatgacgggtctttagaggaatgaacctgaccacctggccaaccagaggatgatgggtctttagaggaatgaacctgaccaacaagAGGATGActggtctttagaggaatgaacctgaccaaccagaggatgacgggtctttagaggaattaacctgaccaaccagaggacgacgggtctttagaggaacaaacctgaccaaccagagtatgacgggtctttagaggaatgaacctgaccgaccagaggatgacgggtctttacaggaatgaacctgaccaaccagaggatgacaggtctttagaggaatgaacctgaccaaccagaggatgacgggtctttagaggaatgaacttgaccaaccagaggatgacgggtctttagaggaatgaacctgaccaacgagaggacgacgggtctttagagtaatgaacctgaccaaccagaggatgacggctctttagaggaattaacctgaccaaccagaggatgacgggtctttagaggaacgaacctgaccaaccagaagaTGACGggcctttagaggaatgaacctga
>TU1809397
aaccagaggaagACGGGTTTTAGAGGAATTAACCTGGCCacccagaggatgacgggtctttagaggaatgaacctgaccaaccagaggatgacgggtctttacaggaatgaacctgaccaaccagaggacgacgggtctttagagtaatgaacctgaccaaccagaggatgacggctctttagaggaattaacctgaccaaccagaggatgacgggtctttagaggaatgaacctgaccacctgaccaaccagaggatgacgggtctttagagaaattaacctgaccaaccagaggatgacgggtctttagaggaacgaacctgaccaaccagaggatgacgggtctttagagtaatgaacctgaccaaccagaggatgacgggTTTTAGAGGAATTAACCTGGCCacccagaggatgacgggtctttagaggaatgaacctgaccaaccagaggatgacgggtctttacaggaatgaacctgaccaaccagaggacgacgggtctttagagtaatgaacctgaccaaccagaggatgacggctctttagaggaattaacctgaccaaccagaggatgacgggtctttagaggaatgaacctgaccacctgacaaaccagaggatgacgggtctttagagaaattaacctgaccaaccagaggatgacgggtctttagaggaacgaacctgaccaaccagaggatgatggATCTTTAGagtaatgaacctgaccaaccagaggatgacgggcctttagaggaatgaacctgaccaaccggattacgacgggtctttagaagaatgaacctgaccaaccagaggatgatggctctttagaggaatgaacctgacaaaccagaggatgatgggtctttagaggaacaaacctgaccaaccagaggatgacgggtctttagaggaatgcacttgaccaaccagaggatgaaggGTCTTtacaggaatgaacctgaccaaccagaggatgatgcgtctttagaggaacgaacctgaccaaccagaggatgacgggtctttagaggaatgaacctgaccacctgaccaaccagaggattacgggtctttagaggaatgaacctgaccacctgaccaaccagaggatgacaggtctttagaggaatgaacctgaccaacgagaggacgacgggtctttagagtaatgaacctgaccaaccagaggatgacggctctttagaggaattaacctgaccaaccagaggatgacgggtctttagaggaacgaacctgaccaaccagaagaTGACGggcctttagaggaatgaacctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1809396 False 612 lncRNA 0.50 2 73496733 73499678
TU1809397 True 1308 lncRNA 0.49 2 73496733 73498080

Neighbor

gene id symbol gene type direction distance location
LOC110496758 LOC106530873 coding downstream 51571 73433715 ~ 73445162 (-)
LOC110496760 NA coding downstream 103035 73388761 ~ 73393698 (-)
LOC110517586 LOC106589098 coding downstream 133002 73304371 ~ 73363731 (-)
LOC110496752 LOC106589094 coding downstream 365294 73006005 ~ 73131439 (-)
LOC110489356 LOC106589108 coding upstream 255686 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 322330 73822008 ~ 74115567 (-)
LOC110487813 NA coding upstream 809804 74309482 ~ 74331094 (-)
mc5ra LOC106589114 coding upstream 918457 74418135 ~ 74437944 (-)
ldlrad4a LOC106589113 coding upstream 996704 74496382 ~ 74540849 (-)
G1580817 NA non-coding downstream 256 73474577 ~ 73496477 (-)
G1580832 NA non-coding downstream 1432 73494685 ~ 73495301 (-)
G1580823 NA non-coding downstream 10651 73466891 ~ 73486082 (-)
G1580820 NA non-coding downstream 41146 73454655 ~ 73455587 (-)
G1580801 NA non-coding downstream 46943 73449565 ~ 73449790 (-)
G1580837 NA non-coding upstream 15167 73514845 ~ 73522406 (-)
G1580841 NA non-coding upstream 23692 73523370 ~ 73523653 (-)
G1580842 NA non-coding upstream 24550 73524228 ~ 73524475 (-)
G1580847 NA non-coding upstream 30974 73530652 ~ 73531047 (-)
G1580849 NA non-coding upstream 33294 73532972 ~ 73533172 (-)
G1580625 NA other downstream 448047 73047833 ~ 73048686 (-)
G1579954 NA other downstream 1281944 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1858601 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1978264 71517869 ~ 71518469 (-)
G1580844 NA other upstream 25604 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 657627 74157305 ~ 74157747 (-)
G1581465 NA other upstream 807100 74306778 ~ 74307678 (-)
G1581622 NA other upstream 946918 74446596 ~ 74446989 (-)

Expression


Co-expression Network