LOC118941381 (LOC106602212)


Basic Information

Item Value
gene id LOC118941381
gene name LOC106602212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 125750 ~ 133616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953871.1
GAACAATTGCCTACACAGAGAACCATACAGTGAATAAGACGTGCATTGTGAAGACTGAAGGAAGTGAAACCGCCCATTCATGGTTGATTTTATTACGATGTTTGTATTGTTCATTGTTCTTTCATTTATGACCAATGTTTTTAGAACGGCTACGAAGACTCAGATTATTTTGGAATGCTGTGACATCGCCCTATTTAGGATATCGCTGCGTAACTAAGGAATCGATAAAAGTATATTATGTTGACTCAAACGTTCCAACGTTCTATGGAACATATACTATTATGGGTTTTCCAACACACAGTTAGCCACTGTCTCACGTAGCCTGTTTTAGTTTTGCTAGGGTTGACCCCGATTTATCCTTGACGAATGACCATTTTAAATATCAGGGAACAAGAGCAATTTAATGCACTCTTTAAGGCAAATTCAGtctcggGGCCCTCAGGCCAGAGTGGGGCAGCAAAGCACCTATGGGGCTGACTACAAGCCCCCCAGTGATCGGCACCTCAGGCTGTTCAGGCTGCATGCAGAGCCGTCTTGCACCACACACCAGAAGttggCGGATATGTGggctcagtactacagacagtgTTTCCAGACCATTACCAACGGCCCACAGAACCCCGCCTTTGCCTTCACTCAGAAGGGGAGAACAGTGAGGGCAGCTACGTTGGACAGTGAGAGTTTCAGTAAGATCCAAGTGGAAAGGACAGCTCCTCCAGAGAAGGGGCAGAGCCAGATACCACCACAGCGTTCGAGCTCCGACTCTGGGGAACGAaggtcggtctctccctctctctcctcaacctcaGTCCATAACTCCCTCCCGTCCCGCCCTGCCAGGAAAGAGGCATGGACACATGCAACAGGGGACCCGGCACTGGGGGTCACAACGACACCCAAGGACATGGTGGAGCTGCCTCACATcggcagtggagaagGAAGTGATGGGGAGCTCCCGCTGCAGGTGGAGCGGTTAAGGGCGGAGCAGTTCCGTCAGGACATGACCCACTCATCTAGGCTGGAAGGCCAGATCAACCAGCGCATAGCCACCCAGTCTAACCTCATGCACCTAGGGCTGCCATTCAACGGTGTGACCACCTACAGCCAGAGTTACACACACTGGGACAACCCGTCCACACTGAGAGGCCCGCAGTGCATCCTGCCTGAAGCCACACTCAACTGGAGGGCCTGGGTGTCAGAGTACCAGGACCGGTACCAGGGCCCTGATCGCTACGTCCCTGGGCAGAGGAAGCCCCCTAGCGGCCTGAAGGAGCCCTGCACCGCCGAGTACCAGCCTGGTGCCCACACCGCAGACCAGACCCGAGGACACATCTGCTCGGAGTATCAGAGGCACTTCACTAAGAAGAACTACCCTGGCCTGTCCAGACCCAAGACCAGCCCTGCGTACAGACAGAGACAACTGACCTAAACCATCTTCAGGATTAGACCTGCATAGTCTCTATTCGATGTTCAACCTGACAAAGgttaataaaaaaacatttgaaatg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106602212 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953871.1 True 1508 mRNA 0.52 8 125750 133616

Neighbor

gene id symbol gene type direction distance location
LOC118941384 NA coding upstream 32091 88562 ~ 93659 (+)
LOC110516047 LOC106602219 coding upstream 53535 69812 ~ 72215 (+)
LOC118941385 LOC106610450 coding upstream 63559 60866 ~ 62191 (+)
LOC110516050 nar5 coding upstream 73931 48513 ~ 51819 (+)
LOC118941529 LOC106610451 coding upstream 83695 25625 ~ 42055 (+)
LOC110534579 LOC106602208 coding downstream 613231 746847 ~ 763889 (+)
LOC118941386 LOC106602222 coding downstream 630381 763997 ~ 783076 (+)
LOC110518435 LOC106602206 coding downstream 649955 783571 ~ 794371 (+)
trnal-cag-27 NA coding downstream 663394 795780 ~ 797202 (+)
LOC110534574 LOC106602215 coding downstream 687295 820911 ~ 822554 (+)
G1581849 LOC106602211 non-coding upstream 1264 123824 ~ 124486 (+)
G1581846 NA non-coding upstream 9266 116250 ~ 116484 (+)
G1581905 NA non-coding downstream 8736 142352 ~ 142974 (+)
G1581911 NA non-coding downstream 321328 454944 ~ 455227 (+)
G1581929 NA non-coding downstream 363023 496639 ~ 496861 (+)
G1581985 NA non-coding downstream 482893 616509 ~ 616743 (+)
G1582019 NA non-coding downstream 529992 663608 ~ 663823 (+)
G1582090 LOC106602215 other downstream 676629 810245 ~ 958446 (+)
LOC110510959 LOC106602231 other downstream 1427889 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 1448475 1580873 ~ 1620973 (+)
G1583003 NA other downstream 2065312 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 2663487 2770293 ~ 2811692 (+)

Expression


Co-expression Network