LOC118941386 (LOC106602222)


Basic Information

Item Value
gene id LOC118941386
gene name LOC106602222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 763997 ~ 783076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953888.1
CTGCATTTCATTCAATCTGAAAGCAGGTATAGGGCCAATACCACAACTATCTAATAGGCAGAATAATTACAGTGTAAACGTGATGTTTACATTAGGAGTGTTGAAAAACCTCCCTCCCCGCGATGCCTGCATCCGCCAATGACTGCAGCTATAGGTCACGGAGAAAGCGACGTGCCAGGTATGGCTGTTGTAGACTGCGTCTGTCCGGAGGAGGAGAGCTGGAGAGGAGACTGAGTAGAGCCTCGGTAATAAGAGATCAGACAAACACAGCAAGCAGCATGCCGTTTGGGATGGTAACGCTTCCCACTGTCCGATACTATCATCACTAAGCACTGAACAAATCTACAAAGCGGAGGGTAATGATGACATCACAAATTCAGACTGATACAGTGTGATCCATCATTCCTGGCCTGACATTGACATGGCAACAGGCAGGAAGGGGTCGACCTCAAAGGGAGGAAGCGTGCGTTTCCCTGACGACGAGGATGCCATGGGCTCCCCTGTTCACCGTGAGGACAAAGCCAAGGATTCTTCCATCCCTGCTCTCCCAGAGCCTGATGGGAACTTCCTGGTTAAGgtaGGGTTCCTGAGGAGTCTGCATCGTTATGAGATCGTCTTCACCCTCCCAGAGGTGCCTGTGCTGGGGAAAGATGTgtgctccctcccttcctcctcatcACCGACTCCCAGACCCCTCCTCAAAGTCAACCGTGTCACACCCACACCAGAGGgtgGGGTGAAGGTGACGTGTGAGTACACCACCCATCAGGAGGGGGTGCTGCAGGAGGAGCTGACCCTGATCAGCCGGGGGAAGAAGGACCAACGTCTGCGGGTCAGACTACAGGCCCGGGTCATGGatCGTCACCATGGTACTCCTATGCTGCTGGAGGGGGTGCGGTGTCTGGGGGCGGAGAAAGAAAAAAGGAAATGAGCCGTCTGTCCCTTTATATCTTTCCCCTCCTGTAGAGACCAGCCATCATCCATCCCTTTATATCATCCCCTACTGTAGAGACCAGCCATCATGTATCCCTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCGTCCGTCTCTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCATCCGTCCCTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCATCCGTCACTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCATCCGTCACTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCATCCGTCACTTTATATCTTCCCCCTCCTGTAGAGACCAGACATCATCCGTCCCTTTATATCTTCCCCCTCCTGTAGAGACCAGCCATCATCCGTCACTTTATATCTTACTCCTCCTGTAGAGACCAGCCATCATCCGTTCATTTATATCTTCCCCCTCCTGTAGAGACCAGCTGTCGTAGTGGAACAAAACCAGCACTTACCTGCACTTagccacacacatgcatgcacccgtagtggcacacacacacctgaggagGCTGATGGGAGGTGCTATAGGGACGGCTTAGTGTAAAGACTGGAATGGAACatgtggaacggtatcaaacatatagaaaccacgtttgactccgttccatgaattccattccagccattacaatgagcccatcctcctatagctcctcccaccagcctcctctgacacacaaacacacacacacacaaactgtttttttttgtgattaGCCCTGTAATGAAGACCAAGGTGTCCATGATCACTTATAGTTCCCCAAATGTAAAATGACACATTGCTCAGTGAGGGAGGCAATGTGTTTCCAACATCCACTGTAGGTCCATTATATAACCAGGCACTGCAGCTCTTTGCTTCTCGTCCCTTCTGTCGTTCTGCAACAAGAGCCAAGCGTCAACCAGCCTTAAACGATCAGAAATAATATTTACATTTTAATTATGCACGTCAATATAACCTGTCATTGTATTATGatttacactgagtggacaaaacagtaagaacaccttcctaatattgagttgcaccccccccattcaccctctgaatgtcacacatacacaatccatgtctcaattctctcaaggcttaaaaatccttctttttagcctgtctcctccccttcatgtaCACCGatttgaagtgtatttaacaggtgacatcaataagggatcatagatttcacttggattcacctgttcagtctgtcaaggaaagagcaggtgttcttaatgcttTGTCCACTcgttgtacagtatgtgttctgTGTGAGCGCCACCTTTCACCAACTATGTAAGAGTATGCCTTTTAGTCTATGTGTCCTGCAAAACTGTCTCTGTATTGTACTAGATTCTCCTATATCTCTGTCAGTAAATAAAATATCATGTCAACTGTTAA

Function

NR:

description
UPF0687 protein C20orf27 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953888.1 True 2386 mRNA 0.48 6 763997 783076

Neighbor

gene id symbol gene type direction distance location
LOC110534579 LOC106602208 coding upstream 108 746847 ~ 763889 (+)
LOC118941381 LOC106602212 coding upstream 630381 125750 ~ 133616 (+)
LOC118941384 NA coding upstream 670338 88562 ~ 93659 (+)
LOC110516047 LOC106602219 coding upstream 691782 69812 ~ 72215 (+)
LOC118941385 LOC106610450 coding upstream 701806 60866 ~ 62191 (+)
LOC110518435 LOC106602206 coding downstream 495 783571 ~ 794371 (+)
trnal-cag-27 NA coding downstream 13934 795780 ~ 797202 (+)
LOC110534574 LOC106602215 coding downstream 37835 820911 ~ 822554 (+)
LOC110514371 LOC106602218 coding downstream 67599 850675 ~ 858141 (+)
LOC110515399 LOC106602215 coding downstream 84929 868005 ~ 869609 (+)
G1582038 NA non-coding upstream 72363 691415 ~ 691634 (+)
G1582023 NA non-coding upstream 93422 670307 ~ 670575 (+)
G1582019 NA non-coding upstream 100174 663608 ~ 663823 (+)
G1581985 NA non-coding upstream 147254 616509 ~ 616743 (+)
G1581929 NA non-coding upstream 267136 496639 ~ 496861 (+)
G1582101 NA non-coding downstream 57709 840785 ~ 842133 (+)
G1582102 NA non-coding downstream 59187 842263 ~ 842982 (+)
G1582103 NA non-coding downstream 60791 843867 ~ 891587 (+)
G1582117 NA non-coding downstream 108011 891087 ~ 998973 (+)
LOC110516050 nar5 other upstream 712806 48513 ~ 51819 (+)
G1582090 LOC106602215 other downstream 27169 810245 ~ 958446 (+)
LOC110510959 LOC106602231 other downstream 778429 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 799015 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1415852 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 2014027 2770293 ~ 2811692 (+)

Expression


Co-expression Network