trnal-cag-27


Basic Information

Item Value
gene id trnal-cag-27
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 795780 ~ 797202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-cag-27
gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgaca
>TU1810860
cgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcacaaaggggttcaagggggccgaatactttcgcaaggcactgtatttgaggaTATTTTTTCCCTGAATGTTCTGTAAAACAATTATGATTctataaaaatgttttacctgcaTGTCTTGCACCCTACTGAAAATATTTTAACATGTGACACTTTTCAAATCgaatcgtattggtcacatacacatgtttagcagatgttatgcgggtgtagcgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaacatatacccaaaacacacaaatcttaagtaaggaatggaattaagaatatatgcATATACGGACGAACGATGTCAGAGCGGCATGGACATACAGTAGAGAAATAtagaattaagcaataaggcacgagggggtgtggtatatgaccaatatacctcGGCCAATATACAATTTTGATCCTGGTAGTGTGCCAAATTAATATTCATAACCTACAGTAAAGCACTGTTTg
>TU1810862
cgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcacaaaggggttcaagggggccgaatactttcgcaaggcactgtatttgaggaTATTTTTTCCCTGAATGTTCTGTAAAACAATTATGATTctataaaaatgttttacctgcaTGTCTTGCACCCTACTGAAAATATTTTAACATGTGACACTTTTCAAATCgaatcgtattggtcacatacacatgtttagcagatgttatgcgggtgtagcgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaacatatacccaaaacacacaaatcttaagtaaggaatggaattaagaatatatgcATATACGGACGAACGATGTCAGAGCGGCATGGACATACAGTAGAGAAATAtagaattaagcaataaggcacgagggggtgtggtatatgaccaatatacctcGGCCAATATACAATTTTGATCCTGGTAGTGTGCCAAATTAATATTCATAACCTACAGTAAAGCACTGTTTgattatgttgttgttgtgtttaatTTACCAGCAAATGTTTCATGTGCCACTGGCTTTTCTATATCTTACCATCTGCCAATGTTCACCTGGAAAACTATACAAAATGGCCATCCCTGGAATATACTGGTCCTGATCAGTAGGAATGTTATTTTTCAAATAGAAACACAGCAGGCAGATAGTCTCTATCTATCATGATTGTATTAAGTTGCTACAAAAAAAAGGATTTTGCTCTGTTTCAGTCACTGAAATAGTTTTTCAGAATAACTGGTCTGACAGCACCCTCTACTGGACCAACACAAATCACACACTGTCAGTGTGGGGCCGATTACGTGTTAACTAGGTATTCTTGTGATTCTTTTTTTATACAATAGGGTCCCCCAAAGAAGTGTGTGAGGGGCTGATTGTGTGAATGTAGACTTTCTCTCAGTCAAGCTGTCTGCCATTTTCTCACATTACAACGTAATTAACTTCCAAAACCAATGTTCAGAAAAGCGTTAAAAGTTCCCAAAACTTTAGCCCAACAGACTTAGCTAGCTACTGCTACTCCTTTATAGCCACAAGACAGCAAGCAAGATATAGTAATAAACATTTATTCTAAAGATAAACTGTCAGGCTCATGTACTGGTAATATGAGTTCATTCCTGtatgtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgacattaATTTTTGTAATGTAGATGCAATATGCCTTTCTTTGTAACATATTTATATTCAACAGGAAATTAATGTCAGAAAATGTTGTTCAGTGTTATAACACTTTGACCCAAAA
>TU1810864
cgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcacaaaggggttcaagggggccgaatactttcgcaaggcactgtatttgaggaTATTTTTTCCCTGAATGTTCTGTAAAACAATTATGATTctataaaaatgttttacctgcaTGTCTTGCACCCTACTGAAAATATTTTAACATGTGACACTTTTCAAATCgaatcgtattggtcacatacacatgtttagcagatgttatgcgggtgtagcgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaacatatacccaaaacacacaaatcttaagtaaggaatggaattaagaatatatgcATATACGGACGAACGATGTCAGAGCGGCATGGACATACAGTAGAGAAATAtagaattaagcaataaggcacgagggggtgtggtatatgaccaatatacctcGGCCAATATACAATTTTGATCCTGGTAGTGTGCCAAATTAATATTCATAACCTACAGTAAAGCACTGTTTgattatgttgttgttgtgtttaatTTACCAGCAAATGTTTCATGTGCCACTGGCTTTTCTATATCTTACCATCTGCCAATGTTCACCTGGAAAACTATACAAAATGGCCATCCCTGGAATATACTGGTCCT
>TU1810857
ttcaagggggccgaatactttcgcaaggcactgtatttgaggaTATTTTTTCCCTGAATGTTCTGTAAAACAATTATGATTctataaaaatgttttacctgcaTGTCTTGCACCCTACTGAAAATATTTTAACATGTGACACTTTTCAAATCgaatcgtattggtcacatacacatgtttagcagatgttatgcgggtgtagcgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaacatatacccaaaacacacaaatcttaagtaaggaatggaattaagaatatatgcATATACGGACGAACGATGTCAGAGCGGCATGGACATACAGTAGAGAAATAtagaattaagcaataaggcacgagggggtgtggtatatgaccaatatacctcGGCCAATATACAATTTTGATCCTGGTAGTGTGCCAAATTAATATTCATAACCTACAGTAAAGCACTGTTTg
>TU1810858
ttcaagggggccgaatactttcgcaaggcactgtatttgaggaTATTTTTTCCCTGAATGTTCTGTAAAACAATTATGATTctataaaaatgttttacctgcaTGTCTTGCACCCTACTGAAAATATTTTAACATGTGACACTTTTCAAATCgaatcgtattggtcacatacacatgtttagcagatgttatgcgggtgtagcgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaacatatacccaaaacacacaaatcttaagtaaggaatggaattaagaatatatgcATATACGGACGAACGATGTCAGAGCGGCATGGACATACAGTAGAGAAATAtagaattaagcaataaggcacgagggggtgtggtatatgaccaatatacctcGGCCAATATACAATTTTGATCCTGGTAGTGTGCCAAATTAATATTCATAACCTACAGTAAAGCACTGTTTgattatgttgttgttgtgtttaatTTACCAGCAAATGTTTCATGTGCCACTGGCTTTTCTATATCTTACCATCTGCCAATGTTCACCTGGAAAACTATACAAAATGGCCATCCCTGGAATATACTGGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag-27 False 83 mRNA 0.60 1 797010 797092
TU1810860 False 584 lncRNA 0.37 1 795780 796363
TU1810862 False 1423 lncRNA 0.38 1 795780 797202
TU1810864 False 714 lncRNA 0.37 1 795780 796493
TU1810857 False 476 lncRNA 0.37 1 795888 796363
TU1810858 True 606 lncRNA 0.37 1 795888 796493

Neighbor

gene id symbol gene type direction distance location
LOC110518435 LOC106602206 coding upstream 2639 783571 ~ 794371 (+)
LOC118941386 LOC106602222 coding upstream 13934 763997 ~ 783076 (+)
LOC110534579 LOC106602208 coding upstream 33121 746847 ~ 763889 (+)
LOC118941381 LOC106602212 coding upstream 663394 125750 ~ 133616 (+)
LOC118941384 NA coding upstream 703351 88562 ~ 93659 (+)
LOC110534574 LOC106602215 coding downstream 23819 820911 ~ 822554 (+)
LOC110514371 LOC106602218 coding downstream 53583 850675 ~ 858141 (+)
LOC110515399 LOC106602215 coding downstream 70913 868005 ~ 869609 (+)
LOC110518152 NA coding downstream 101460 898552 ~ 901052 (+)
LOC110515221 LOC106602215 coding downstream 121793 918885 ~ 927203 (+)
G1582038 NA non-coding upstream 105376 691415 ~ 691634 (+)
G1582023 NA non-coding upstream 126435 670307 ~ 670575 (+)
G1582019 NA non-coding upstream 133187 663608 ~ 663823 (+)
G1581985 NA non-coding upstream 180267 616509 ~ 616743 (+)
G1581929 NA non-coding upstream 300149 496639 ~ 496861 (+)
G1582101 NA non-coding downstream 43693 840785 ~ 842133 (+)
G1582102 NA non-coding downstream 45171 842263 ~ 842982 (+)
G1582103 NA non-coding downstream 46775 843867 ~ 891587 (+)
G1582117 NA non-coding downstream 93995 891087 ~ 998973 (+)
G1582127 NA non-coding downstream 138114 935206 ~ 935588 (+)
LOC110516050 nar5 other upstream 745819 48513 ~ 51819 (+)
G1582090 LOC106602215 other downstream 13153 810245 ~ 958446 (+)
LOC110510959 LOC106602231 other downstream 764413 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 784999 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1401836 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 2000011 2770293 ~ 2811692 (+)

Expression


Co-expression Network