LOC110515221 (LOC106602215)


Basic Information

Item Value
gene id LOC110515221
gene name LOC106602215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 918885 ~ 927203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953874.1
CATTTCCAAGAAATCACGTGACTGACTAGAAAGCAAAAACGTTCATACGAACCCAAACATTGCTATAAAACATTGGCTGCATCTCCAATTGTAGACATATGCCTCCAGATATCTAGCTCAAAAGGCAGGCAAAGAGACCCAAATTTCTCTGGTTGGGAACAATAGACCTGGGAAGACCTTGACAGCATTCCAAAACCCTAACATGACTGAACAAAATAAAGAGGTCCGTATTGTTCTGGTTGGAAAGACTGGAGCTGGGAAGAGCGCAACAGGAAACACCATCCTGGGGACAAAAgcttttaaataaaaaatgtcctcTATTTCTGTGACATCAACATGTGAAAAGAAAAGAGGAAATGTGGGAGGGCAACATGTAGCTGTCATCGACACACCAGGCTTGTTTGACACCAAGTTAACACAGGAGGAGGCACTGAAAGAGATCTCACAGTGCCTGCTTTTCTCTGCTCCTGGTCCCCATGTGTTCCTGGTTGTGATCAAGCTGGGAAGATTCACTGAAGAGGAACAGAAAACTGTGGAGATGATTCAGATATTATTTGGGGATGAAGCATCCAGATACACCATGGTTCTCTTCACACATGGAGAGAGTCTTGATGATGACGACGTTGTAACAATTGAAGATTATTTGCTTGAAAATCCACATCTTCAGTGTTTGATTGCCAAATGTAATGGAGAGTATCAGGTCTTCAACAACAAAGATAAGAATTGCTCCCAGGTCACTGAGCTGCTTGAGAAGATAAACAAGATGGTGAAGATGAATGGAGGAAGCCACTACACCACTGAGATGTTCCAGGAGGCTGAGAGAGCGATTGAAGAGGAGAAGAACAGGATCCTGAAAGAGAATGAAGAGAAGATacgcagagaggaggagaaactgaagatggaaaaaattaaaataaaagctCTGGAGAAAGTTCTTaaagaggagaatgagaggatcCTGAGAAAGAACAAAGAGCAACAACTCAGATATGAGGAGAAACTGGGGGAAATGAAAATAGAAGCTCGGGAGGAAGCAATtaaaaaggagaaagagagggtcctGAAAGAGTACGAAGAGCAGAGACTCCGAGAAGAGGAACTGACAGTGGTATCATCCAGAATGTTTGCTGTGGGGGAAGAAATAAAGACGCTGCCAGAAAAACATGAAAGAGAGGCTAGAGATGAAGCTGAACAATTTTCAATTTTCAAATATTTGGATTTCAGTGGAATGTTGGCCCCCGTCTTGAATAAGTCGCTCAGCTACATCAGAAGCAAATGTAATATACAATGAAAATGTGAAACAGCGGTGTACCATCTAACATTGCTTTACTCTACTGATTAACTTGCTTAGATATTCAACTAACTATCTATTgataaatctagctagctagctattgatAAAGATCTGTACATTTTCTGACTTTTTTTTTCTTAGTGTCTCTTCATCTTGCCTGTTCCAGTTCGATATTGTAATGTGGGGTGTCCTCAGAAATTACCTTTTAGATTAGGCCTATATCATGTCATGTGCCATACATCTTCTAAATGCAGGCGGTTGTGGCAATTACATTGACTTCTAATGTAGAGACTCCGAGTTAGAAAATGGTatttcatacactgcagttgagaaACAATAAGAAAATGATTCTGCTTTGAAAGCTGATAAACTTCTACCCCCATTTTTGAAAATGGCccatgaatgttttggtacaccaacTGGAgaactcttctttgtctacacccagcCAGCATTGTTAACACCCTCTTAGGCCTTAGAcctacccatctctttaaggattcctGTGAGGCCATTTGCTAAACAGAGTGTTTAGTTattaaacaaccaaagatttcaagactgaaagcggtgaaagtagtagcctacaacatcggaaaactccaggtaaaaataaatgttatctAGGCCTTGGCTtagtcatgttgttcttcacattaccatctctggtaaacacacactatatcaaactATATCAActaaaatcaacatttatttgtcacatgcacaggatacagaaggtgtaaacagttCAGTGAAATTGATACTTGcagagtggagtcttttgtttagacattaGACAACAATTaatcataatcccaactcataatacCATTAATCTGTAGCTAAAGATAACCTACTAGGTTCAAtgttatgtagctagctaacattaggctataactagcattGCAGAGATTTGAGATATTAATAATATTGCTACACActtcatacacgtaacgttagctagcgaaccagccagctaacgtcaactagctaacagtacacattAACTTGCAATAAagacaactttctgacaaaatttgaaatgtataatatctgaaaatgtagctagactcttacccttATACATGGATGAATGATTCTCCCtctgccatggttgcccttagatTGAAGACGTAATGCTGAGATgggtgttttatacaacaaccTCCTGTGTCTTCTTCTTCTGTATGTTTTATGGCAGACTACAGCCCAAAAAGGTGTgttaccgccaccaactggacagGGTTGAAAACACCAAGGTAAAAATAAAACCCATGTGATAGGGAAAACGAACTTTATCCACCC
>XM_036953873.1
TTGACGCCTGCACTATAAAAGCTCTCTTACCattttaaagctagaatccttcatTGAAACCATAACAATGCGTTCTCCCCACCCGTTATGCTAAAAAGCTAAGGACTGGGGCTGGATAGAtttaaccactcaaattcatagacagagctatagacTGATATCAAATGTATAGTTTTATCCATGTATGTTTACAAATAGAATTAAACAAGTTTAGGCCGTAATTCAATCAGATCAAGGAGATAGCCGACAGCCGCATAGCTTATCTTTAGGCGGTGCCGTAGCTGCTCTTGTGATCATTGTCATGAAGCCACACCCTTCCCACTTGCATTAGATTAGATGATCAGCAACGCAGTTAAGCCAAAACCACGGCCGGTTATTCAGAGGGGTGTTTTATTACGCTCCCATTGGATAGCTAGCATTGTCTCACTCACGGGATCAGCGCACCTTCCAAGAGACCCAAATTTCTCTGGTTGGGAACAATAGACCTGGGAAGACCTTGACAGCATTCCAAAACCCTAACATGACTGAACAAAATAAAGAGGTCCGTATTGTTCTGGTTGGAAAGACTGGAGCTGGGAAGAGCGCAACAGGAAACACCATCCTGGGGACAAAAgcttttaaataaaaaatgtcctcTATTTCTGTGACATCAACATGTGAAAAGAAAAGAGGAAATGTGGGAGGGCAACATGTAGCTGTCATCGACACACCAGGCTTGTTTGACACCAAGTTAACACAGGAGGAGGCACTGAAAGAGATCTCACAGTGCCTGCTTTTCTCTGCTCCTGGTCCCCATGTGTTCCTGGTTGTGATCAAGCTGGGAAGATTCACTGAAGAGGAACAGAAAACTGTGGAGATGATTCAGATATTATTTGGGGATGAAGCATCCAGATACACCATGGTTCTCTTCACACATGGAGAGAGTCTTGATGATGACGACGTTGTAACAATTGAAGATTATTTGCTTGAAAATCCACATCTTCAGTGTTTGATTGCCAAATGTAATGGAGAGTATCAGGTCTTCAACAACAAAGATAAGAATTGCTCCCAGGTCACTGAGCTGCTTGAGAAGATAAACAAGATGGTGAAGATGAATGGAGGAAGCCACTACACCACTGAGATGTTCCAGGAGGCTGAGAGAGCGATTGAAGAGGAGAAGAACAGGATCCTGAAAGAGAATGAAGAGAAGATacgcagagaggaggagaaactgaagatggaaaaaattaaaataaaagctCTGGAGAAAGTTCTTaaagaggagaatgagaggatcCTGAGAAAGAACAAAGAGCAACAACTCAGATATGAGGAGAAACTGGGGGAAATGAAAATAGAAGCTCGGGAGGAAGCAATtaaaaaggagaaagagagggtcctGAAAGAGTACGAAGAGCAGAGACTCCGAGAAGAGGAACTGACAGTGGTATCATCCAGAATGTTTGCTGTGGGGGAAGAAATAAAGACGCTGCCAGAAAAACATGAAAGAGAGGCTAGAGATGAAGCTGAACAATTTTCAATTTTCAAATATTTGGATTTCAGTGGAATGTTGGCCCCCGTCTTGAATAAGTCGCTCAGCTACATCAGAAGCAAATGTAATATACAATGAAAATGTGAAACAGCGGTGTACCATCTAACATTGCTTTACTCTACTGATTAACTTGCTTAGATATTCAACTAACTATCTATTgataaatctagctagctagctattgatAAAGATCTGTACATTTTCTGACTTTTTTTTTCTTAGTGTCTCTTCATCTTGCCTGTTCCAGTTCGATATTGTAATGTGGGGTGTCCTCAGAAATTACCTTTTAGATTAGGCCTATATCATGTCATGTGCCATACATCTTCTAAATGCAGGCGGTTGTGGCAATTACATTGACTTCTAATGTAGAGACTCCGAGTTAGAAAATGGTatttcatacactgcagttgagaaACAATAAGAAAATGATTCTGCTTTGAAAGCTGATAAACTTCTACCCCCATTTTTGAAAATGGCccatgaatgttttggtacaccaacTGGAgaactcttctttgtctacacccagcCAGCATTGTTAACACCCTCTTAGGCCTTAGAcctacccatctctttaaggattcctGTGAGGCCATTTGCTAAACAGAGTGTTTAGTTattaaacaaccaaagatttcaagactgaaagcggtgaaagtagtagcctacaacatcggaaaactccaggtaaaaataaatgttatctAGGCCTTGGCTtagtcatgttgttcttcacattaccatctctggtaaacacacactatatcaaactATATCAActaaaatcaacatttatttgtcacatgcacaggatacagaaggtgtaaacagttCAGTGAAATTGATACTTGcagagtggagtcttttgtttagacattaGACAACAATTaatcataatcccaactcataatacCATTAATCTGTAGCTAAAGATAACCTACTAGGTTCAAtgttatgtagctagctaacattaggctataactagcattGCAGAGATTTGAGATATTAATAATATTGCTACACActtcatacacgtaacgttagctagcgaaccagccagctaacgtcaactagctaacagtacacattAACTTGCAATAAagacaactttctgacaaaatttgaaatgtataatatctgaaaatgtagctagactcttacccttATACATGGATGAATGATTCTCCCtctgccatggttgcccttagatTGAAGACGTAATGCTGAGATgggtgttttatacaacaaccTCCTGTGTCTTCTTCTTCTGTATGTTTTATGGCAGACTACAGCCCAAAAAGGTGTgttaccgccaccaactggacagGGTTGAAAACACCAAGGTAAAAATAAAACCCATGTGATAGGGAAAACGAACTTTATCCACCC

Function

NR:

description
GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953874.1 False 2602 mRNA 0.40 3 918885 927203
XM_036953873.1 True 2920 mRNA 0.40 3 919249 927203

Neighbor

gene id symbol gene type direction distance location
LOC110518152 NA coding upstream 17833 898552 ~ 901052 (+)
LOC110515399 LOC106602215 coding upstream 49276 868005 ~ 869609 (+)
LOC110514371 LOC106602218 coding upstream 60744 850675 ~ 858141 (+)
LOC110534574 LOC106602215 coding upstream 96331 820911 ~ 822554 (+)
trnal-cag-27 NA coding upstream 121793 795780 ~ 797202 (+)
LOC110534577 LOC106602215 coding downstream 22023 949226 ~ 960377 (+)
LOC110510679 NA coding downstream 79613 1006816 ~ 1009333 (+)
LOC118936295 LOC106610443 coding downstream 171680 1098883 ~ 1117505 (+)
LOC118941388 LOC106610446 coding downstream 236130 1163333 ~ 1166048 (+)
LOC110497265 LOC106610443 coding downstream 242238 1169441 ~ 1190154 (+)
G1582103 NA non-coding upstream 27298 843867 ~ 891587 (+)
G1582102 NA non-coding upstream 75903 842263 ~ 842982 (+)
G1582101 NA non-coding upstream 76752 840785 ~ 842133 (+)
G1582038 NA non-coding upstream 227251 691415 ~ 691634 (+)
G1582127 NA non-coding downstream 8003 935206 ~ 935588 (+)
G1582157 NA non-coding downstream 93858 1021061 ~ 1021393 (+)
G1582171 NA non-coding downstream 120925 1048128 ~ 1048635 (+)
G1582174 LOC106610441 non-coding downstream 128595 1055798 ~ 1056944 (+)
G1582177 NA non-coding downstream 136426 1063629 ~ 1063840 (+)
LOC110516050 nar5 other upstream 867694 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 634302 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 654888 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1271725 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1869900 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1886671 2765199 ~ 2815294 (+)

Expression


Co-expression Network