LOC110534577 (LOC106602215)


Basic Information

Item Value
gene id LOC110534577
gene name LOC106602215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 949226 ~ 960377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953876.1
ACGATTCTAGATACCCAGCTCAACAGGCAGGCAAAGAGACCCTGATTTCTCTGGTTGGAAAGACTGTTCCTTGGAAAAGATTGGCAGCACTCCAAAACCCAAACATGACTGAACAAAATAAAGAGGTCCGGATTGTTCTGGTTGGAAAGATTGGTTCTGGGAAGAGCGCAACAGGAAACGCCATCCTGGGGAGAAAAGCGTTTGAATCCAAAATGTCCTCTATTTCTGTGACATCCTCAAGTAAAAAGAAAAGAGGAAATGTGGGAGGGCAACATGTAGCTGTCATCGACACACCAGGCTTGTTTGACACTAAGTTAACACAGGAGGAAGCACTGAAAGAGATCTCACAGTGCCTGCTATTCTCCGCTCCTGGTCCCCATGTGTTCCTGGTTGTTCTCAAGCTGGGAGGATTCACTGAAGAGCAGCAGGAAATTGTGAAGATGATCCAGACATTATTTGGTGATGAAGCATCGAAATACACCATGGTTGTCTTCACACATGGAGACCTTCTTGATGATGTAACAATTGAAGACTTCCTGCATGGAAATCCCAAACTGGAAAGTTTCATTACCAAATGTAATGGGGGATATCATGTCTTCAAAAACAAAGATCAGAATCTCTCCCAGGTCCCTGAGCTCCTTGAGAAGATAAACAAGATGGTGACGATGAATGGAGGAAGCCACTACACCACTGAGATGTTCCAGGAGGCTGAGAGAGTGATTGAAGAAGAGAAGAACAGGATCttgagagagaatgaagagaagATACACAAAGAGAGGGAAGAACTGAAGGCAAAGTTTGAAGGAGTGTGTCTAAGAGAAGAAGTAGAGAAGCTGGGGATAAAACAGGAAAGAAAAGCTAGAAAGAATGCTGAGAAATTTAGCAAAATGGGAACAGGTGCTACAATCGGAGCAGCTTTGGGAACATTTGGAGGCCCAGTTGGTATGTCAGTTGGTGCAGCAGTGGGAGCTGCAGTGGGAGCTGCAGTGGGAGCTGGAGCATGCAGTACTCAATGAGAGTCCGTAGATAACAGTGCTGTACCTTCTACAAGTTGTTTGACTTCATTACTTGATATTGAAAGCTTCCTCTATATACACAGAGCAAACACAACATATGTTATTGTAGCCTACATTAAAAATTATACTCAGGGGGTTGATGAACACATATTTAGCTGTTTTTGTTATAATGTTTTACTGATCACAAGAAAAGGTTGTTGTATTGAGGTAGATTTTATTAGGAGTAACAGACACCTGCAAAAGATGGGAGGCACTCACTAATAAAGTATTACTTATATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTGTTAACACTCACTAATGAAGTATTACTTATATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCACTAATGAAGTATTACCTAGATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCTAATGAAGTATTACTTAGATGTATTATTAACACTCTAATGAAGTATTACTTAGATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTATTAACACTCACTAATACAGTATTACTTAGATGTATTATTAACACTCACTAATACAGTATTACTTAGATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCTCTAATGAAGTATTACTTAGATGTATTATTAACACTCACTAATACAGTATTACTTAGATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTATTAACACTCTCTAATGAAGTATTACTTAGATGTATTATTAACACTCTCTAATGAAGTATTACTTAGATGTATTATTAACACTCACTAATACAGTATTACTTAGATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTATTAACACTCAAATGGACACATTTCAGCCATCAAGCATTTGTCAAGCAAATTTCCCTAAGGGACATAATGTAATTAATTACTTCATCCATGTGATAATTCTGTATTGTGTTGTTCTTATGACCTCACAGAACTATGGTTCTCATAATTGAAAGAAAGCCTTTTTATCTACTATGCTCCACAGTCAATGTATTCCCTCATGTTGCATAAACCTAGAAACTTGATGCATTACTGACACTTTGAAGTCAACACAACACTGTCTAGAGGGCAGGGAGTTCAAATGCAAAGTCTCATTTTCTATCAAATCATGTCACTTAGGCTGCCAAATCACACTCAAAGAGATGGTAGCATAACAGgaaggtgtcacgacttccgctgaagtcggctcctctccttgtttgcACACGTTTGTTTATTTTGTATTACAGTGTCTGGTGTTGAACATTTATCGCAAATTTATCGCACATTTACACTTTTGCCTTGTGGGCTGGAGGTTTTCAAGAAGCTGCTTTCTTCTGTTATTTTCTCTACTGCCATAATAAAGTGTGTGCTTGTTCAATACTACCTGCTCTCCTGCACCGACTTCTCCACCAGCAGTGGAGAGCCTTGACAGAAGGATAGACCTAAAGGGGAAGTAACATTTCTGCAGAAGAGGTGGGGATGTGGTGTATAACTGGTCTTCTTCAAATCTCTGTGCTTTGAGTATAAGTTTTTTCACCACCCCTAACAGTAGCAATTGTGTTGGTGACAGAGGCAGGAAGTTGAAATGTAAAATCATATGACTTAAGCTGCacttaactcgtttttcaaacactccacaaatttcttgttaacaatctatagttttgcATGGCACAAtaaatttt

Function

NR:

description
GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953876.1 True 2862 mRNA 0.37 3 949226 960377

Neighbor

gene id symbol gene type direction distance location
LOC110515221 LOC106602215 coding upstream 22023 918885 ~ 927203 (+)
LOC110518152 NA coding upstream 48174 898552 ~ 901052 (+)
LOC110515399 LOC106602215 coding upstream 79617 868005 ~ 869609 (+)
LOC110514371 LOC106602218 coding upstream 91085 850675 ~ 858141 (+)
LOC110534574 LOC106602215 coding upstream 126672 820911 ~ 822554 (+)
LOC110510679 NA coding downstream 46439 1006816 ~ 1009333 (+)
LOC118936295 LOC106610443 coding downstream 138506 1098883 ~ 1117505 (+)
LOC118941388 LOC106610446 coding downstream 202956 1163333 ~ 1166048 (+)
LOC110497265 LOC106610443 coding downstream 209064 1169441 ~ 1190154 (+)
LOC118941389 LOC106597675 coding downstream 242156 1202533 ~ 1204035 (+)
G1582127 NA non-coding upstream 13638 935206 ~ 935588 (+)
G1582103 NA non-coding upstream 57639 843867 ~ 891587 (+)
G1582102 NA non-coding upstream 106244 842263 ~ 842982 (+)
G1582101 NA non-coding upstream 107093 840785 ~ 842133 (+)
trnal-cag-27 NA non-coding upstream 152024 795780 ~ 797202 (+)
G1582157 NA non-coding downstream 60684 1021061 ~ 1021393 (+)
G1582171 NA non-coding downstream 87751 1048128 ~ 1048635 (+)
G1582174 LOC106610441 non-coding downstream 95421 1055798 ~ 1056944 (+)
G1582177 NA non-coding downstream 103252 1063629 ~ 1063840 (+)
G1582180 NA non-coding downstream 106437 1066814 ~ 1067157 (+)
LOC110516050 nar5 other upstream 898035 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 601128 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 621714 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1238551 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1836726 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1853497 2765199 ~ 2815294 (+)

Expression


Co-expression Network