LOC118936295 (LOC106610443)


Basic Information

Item Value
gene id LOC118936295
gene name LOC106610443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 1098883 ~ 1117505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953879.1
GGCTTCCACACAATTTTGGACCCCCTTGTGGCTACCCTAAATGTGGATTATGAAATCATTTTTACATAACTAATTTTTGCTATCATTATTTTTTTACATCTGTTATTAGACAGTGGCAACGCGGAACACTAATTTAACCCACAGATTTTCTAGAGGGACGGCTTTAGGCGGAACACAACAGTATCGTACCACATGCatctgcaatttttttttctaTTCAGAAGTAAGAAATTCCGCACGAAAATTAGAGTTCAAGCACAAAGAAGGAAATATAGAGATATCAGCAAATCCCGGGAGGAAACCACCGGTGCAGCCAATGATGAACATATACCCAAGAACTCTGATGGGAGATCGGAGGAGGAGCTTCAATGCAGCCTGAGCCTGATAGCTCAGGGAAGAGATCCTTCAGAGttgctgcagtgtgtctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATGGTGGGGTCTCTAAGAGCTTCTTAGCCTATAAGACCAACTCATCTGCAGCTATAGAACAGCTACAGACCAgcaacaacaacctgactaaagagagagaccagatacagaccagatacaacaccctgactaaagagagagaccagctacagaatagTTACAgcaccctgactaaagagagagaccggctacagaccagttacaacaccatgactaaagagagagacaagcTACAGACTGAGAGAAATTTTCTTAGCAATCTCAGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGTCTAAAACCTGGAAGGAGAGCAGAAAGgactgtctggagagaggagcagacctggtgatGATAAACAGTGATAAGGaacagACAtttctcttcaacctcaagaagagagtctggattggtctgactgactctgttaaGGAGGGGACCTGGAAATGGGTGGACGGCACCCCACTGACCACAAGgtactggtattccAAACAGCCTGATAATGCAGGCCCTAATGGGGACGAGGACTGTGCTGAGATACACAAAGACCAGAGTCCTCTAAAGGCATGGAATGACATGTCATGTGACAGCAAACTCAACTGGATTTGTGAGAAAGCGGTttaacatcaccatgacaacatgctgtaacacatacagtagccttcAGTGCACAGAacttcctcctctgtctctgtctctctctctctttgtctcaaaCTCAGGCACACAaatgttgtatttatttgtattagtATATTAATAAAAGTCCTACTTGTTTCCTGA
>XM_021573281.2
ACTGATAAAGAGTTTCACTACCATAAATCACACAGACGCAGGACAGTGCAGGAAGAAGACACAGCTATAGATGTATATTAGAGTTCAGGTTAGAAGTAGAAGTTACTGTATTTGATCACAAGTGTGTTAAGATGTCAGAGGGAGTCTATGAAATCCCAGACGGATTTGAAGACGATGAGCCTGATACCATGAAGAACACAGACATTGATGGCCAAATATATGCCAACGTAAGAGCCTTCAAGCCCAGTCCAAGAGATGTAGTTGTTGCTTCAGAGCCTGATAGCTCAGGGAAGAGATCCTTCAGAGttgctgcagtgtgtctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATGGTGGGGTCTCTAAGAGCTTCTTAGCCTATAAGACCAACTCATCTGCAGCTATAGAACAGCTACAGACCAgcaacaacaacctgactaaagagagagaccagatacagaccagatacaacaccctgactaaagagagagaccagctacagaatagTTACAgcaccctgactaaagagagagaccggctacagaccagttacaacaccatgactaaagagagagacaagcTACAGACTGAGAGAAATTTTCTTAGCAATCTCAGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGTCTAAAACCTGGAAGGAGAGCAGAAAGgactgtctggagagaggagcagacctggtgatGATAAACAGTGATAAGGaacagACAtttctcttcaacctcaagaagagagtctggattggtctgactgactctgttaaGGAGGGGACCTGGAAATGGGTGGACGGCACCCCACTGACCACAAGgtactggtattccAAACAGCCTGATAATGCAGGCCCTAATGGGGACGAGGACTGTGCTGAGATACACAAAGACCAGAGTCCTCTAAAGGCATGGAATGACATGTCATGTGACAGCAAACTCAACTGGATTTGTGAGAAAGCGGTttaacatcaccatgacaacatgctgtaacacatacagtagccttcAGTGCACAGAacttcctcctctgtctctgtctctctctctctttgtctcaaaCTCAGGCACACAaatgttgtatttatttgtattagtATATTAATAAAAGTCCTACTTGTTTCCTGA

Function

NR:

description
CD209 antigen-like protein C isoform X1

GO: NA

KEGG:

id description
K06561 CD207; CD207 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953879.1 False 1277 mRNA 0.44 7 1098883 1117505
XM_021573281.2 True 1172 mRNA 0.45 6 1110846 1117505

Neighbor

gene id symbol gene type direction distance location
LOC110510679 NA coding upstream 89550 1006816 ~ 1009333 (+)
LOC110534577 LOC106602215 coding upstream 138506 949226 ~ 960377 (+)
LOC110515221 LOC106602215 coding upstream 171680 918885 ~ 927203 (+)
LOC110518152 NA coding upstream 197831 898552 ~ 901052 (+)
LOC110515399 LOC106602215 coding upstream 229274 868005 ~ 869609 (+)
LOC118941388 LOC106610446 coding downstream 45828 1163333 ~ 1166048 (+)
LOC110497265 LOC106610443 coding downstream 51936 1169441 ~ 1190154 (+)
LOC118941389 LOC106597675 coding downstream 85028 1202533 ~ 1204035 (+)
LOC110534781 LOC106610446 coding downstream 127365 1244870 ~ 1247840 (+)
LOC118941393 LOC106610423 coding downstream 207435 1324940 ~ 1328453 (+)
G1582193 NA non-coding upstream 25307 1073343 ~ 1073576 (+)
G1582192 NA non-coding upstream 26618 1072044 ~ 1072265 (+)
G1582180 NA non-coding upstream 31726 1066814 ~ 1067157 (+)
G1582177 NA non-coding upstream 35043 1063629 ~ 1063840 (+)
G1582174 LOC106610441 non-coding upstream 41939 1055798 ~ 1056944 (+)
G1582220 NA non-coding downstream 2326 1119831 ~ 1120703 (+)
G1582222 NA non-coding downstream 56900 1174405 ~ 1212762 (+)
G1582260 LOC106610447 non-coding downstream 111385 1228890 ~ 1261384 (+)
G1582273 NA non-coding downstream 162416 1279921 ~ 1280676 (+)
G1582296 NA non-coding downstream 233053 1350558 ~ 1358534 (+)
G1582090 LOC106602215 other upstream 140437 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 1047692 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 444000 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 464586 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1081423 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1679598 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1696369 2765199 ~ 2815294 (+)

Expression


Co-expression Network