LOC118941388 (LOC106610446)


Basic Information

Item Value
gene id LOC118941388
gene name LOC106610446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 1163333 ~ 1166048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953892.1
ACAGACGCAGAACAGCACAGGGAGACAACACATCTAGATGCACATTAGAGTTGAGGTAAGAAGTAGAAGTTACTGTATTTGACCACCAGTGTGTTAAGATGTCAGAGGGAGTCTATGAAAACCCAGAACCATTTAAAGACGATGAGCCTGATGCTATGAAGAACACAGACATTGATGGCCAAATATATTCCAATGTAAGAGCCTTCAAGCCCAGTCCAAGAGATGGAATTGTTGCTTCAGAACCTGATAGCTCAGGGAAGAGACCCTTCCTAGTTGCcgcagtgtgtctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATAACAGAGTCATCAAAGATTCTGAGGATAAAAGGAACAACTTGTCACAGAGTTGTTCCCTTTATGAGAATAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactaaagagaaaggTCATATTCAGGCAAAGCTTTTTGTGATGGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTCCAGTTTGTACTTCCTCTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGGATTgcaagaggagaggagcagacctcgtgatcataaacagcagagaggaacagACATTTGTCTTTAACCTCCACATGAGAGcctggattggtctgactgactctgtcactgAGGGGACCTGGAAGTGGGTGGACGGCACATCACTGACCACAGGGTACTGGAGCGCAGGACAGCCTGATAATTATGGGCAGGAGGACTGTGCTGAGATATACTTTAGACAAGATGACCCTGTAAAGACATGGAATGATGACAAATGTGGCACAAATCATAACTGGATCTGTGAGAATGTGGTGTAACAATAACACAGTAAcaaaca

Function

NR:

description
CD209 antigen-like protein E isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953892.1 True 910 mRNA 0.46 6 1163333 1166048

Neighbor

gene id symbol gene type direction distance location
LOC118936295 LOC106610443 coding upstream 45828 1098883 ~ 1117505 (+)
LOC110510679 NA coding upstream 154000 1006816 ~ 1009333 (+)
LOC110534577 LOC106602215 coding upstream 202956 949226 ~ 960377 (+)
LOC110515221 LOC106602215 coding upstream 236130 918885 ~ 927203 (+)
LOC110518152 NA coding upstream 262281 898552 ~ 901052 (+)
LOC110497265 LOC106610443 coding downstream 3393 1169441 ~ 1190154 (+)
LOC118941389 LOC106597675 coding downstream 36485 1202533 ~ 1204035 (+)
LOC110534781 LOC106610446 coding downstream 78822 1244870 ~ 1247840 (+)
LOC118941393 LOC106610423 coding downstream 158892 1324940 ~ 1328453 (+)
LOC110534952 NA coding downstream 168559 1334607 ~ 1342219 (+)
G1582220 NA non-coding upstream 42630 1119831 ~ 1120703 (+)
G1582193 NA non-coding upstream 89757 1073343 ~ 1073576 (+)
G1582192 NA non-coding upstream 91068 1072044 ~ 1072265 (+)
G1582180 NA non-coding upstream 96176 1066814 ~ 1067157 (+)
G1582177 NA non-coding upstream 99493 1063629 ~ 1063840 (+)
G1582222 NA non-coding downstream 8357 1174405 ~ 1212762 (+)
G1582260 LOC106610447 non-coding downstream 62842 1228890 ~ 1261384 (+)
G1582273 NA non-coding downstream 113873 1279921 ~ 1280676 (+)
G1582296 NA non-coding downstream 184510 1350558 ~ 1358534 (+)
G1582331 NA non-coding downstream 261417 1427465 ~ 1427992 (+)
G1582090 LOC106602215 other upstream 204887 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 1112142 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 395457 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 416043 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1032880 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1631055 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1647826 2765199 ~ 2815294 (+)

Expression


Co-expression Network