XLOC_003500 (fbln2)


Basic Information

Item Value
gene id XLOC_003500
gene name fbln2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27274355 ~ 27383732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006858
CTTTAAAATTCTCAGCGCGCTCAAGCTGCACTGTGTAGGCTTGATAAAGCAAGTTAGTTGGCTGCAACTTCTAACCTATGGACACGCACGGAAGAACGTGACCAACGCGAGGTTTCACTAACAGCCTGCAGTTCACAAGAGGAGAGTCAACTGTTCAGAGCCTGGATTGTATTGGGGACATTTATCACCTGTTGATACACTAACATCAAGGCAAAATGGGCCGTGGCCTCTTGAACTTGGCATTTTTGTTGAGTATGAGTGGCTGCCTTGGACAAAAGGATTGCACTGGTGTAGATTGCCCTGAACTGCAAAACTGTATAGAAGAGGTCTTGGACACCGGAGCATGTTGTGCTACCTGTGTACAAACAGGCTGCATGTGTGAGGGGTACCAGTATTATGACTGTATCAGTGCTGGCTTCAGAAACGGCAAGGTTGCAGAAGGAGAGTCATACTTTGTGGACTTTGGGAGTACTGAATGCTCTTGTCCACAAGGGGGTGGACGGATCAGCTGCCATTTTATACCATGTCCTGAAGTTCCAGCTAACTGCATAGAATTGTCGGAGCCGGCAGATGGGTGCATTCAGTGCGAGCGAGTAGGATGCGTTCACAAGGATCAGAAGTACGAAGCTGGTCACACATTCCAAATTGACCCTTGTGAAGTATGCCACTGCCCAAATGGTGGTGGGGATCTAATGTGCTATCCGGTTCCAAGCTGCAATCCAAGTCGGGCTTCAAAACCCATGCTGATGACAACAACTGAAGAAACCACACAAGGGATGCCCTACCGAGACCccataatgcacatttttaacaATCAAGGCTCTAGAATTCCCTTTACCAAACATTTTCCCTTGCATGCCAATAACAATCGTCCTTTTAAGCTACATATGAGAAAAATAGATGAAAAAGAGGAGGATGAGGAAGACTATGATTATCCACCCACTGATTACTCAGCTCCTTCTCATGATGATTTTGCGGCTCCCACAGAGTCATCCATCATGTCGGTATCTCGTTCAGATAATTTTACCCCCCACCAGGGTGTGCACAGGGGTGCTAAGCAAGAGCTGAGAGAGATGCTTGGTATTCATAGGTCCACAACAGAAAGGCCACAGTTTCCTTTCTATAAGGACAGTACAGACCGAATGAGAGTAGGCACTCGCAATGACAAACCAAAAAATGAGCTATTCAGCCCTCTGGAATATAAAACAGACCGGGAACGATTCATCCTTCCTGTGGAAACTACAAACAGACTGGGATTCTCCAGTCACAAAGACGCTTCTGAGATCCATAGCTTTAGTCTTTATAAAGACAGCTTCAATCAAGAGGCCCTAACAGATGATGAACAGCTTGAATTTCCTTCAGAAACTACTGATGGGGAAAGAGATACCTCACAGGAGGACACCACATACAGCAAGACAGTTACTGACTCTCCAGTGACTATTGAGAAAACTACATCATCTCCACTTTGGGAAACCACAATTTCAATGCAAGCTGCTTGGGATGTTGGATCAGAGAGTCAAATTCGCAAACTTTTCCCAAATACTGTGGAAACAGATGGCTCCAAACATGAAGAAACCATCACCAGAGAGTCTAGTAAAGAAAAAGCAGCTGTTCTGAATGAAACTACAAGTCTGTATGGCTTTCGATCAATCACTGGTGATCAGAATGAATATATCTTGAGCACTCCAGATCCTGCTAAGCAAAGTGTGACCATCCCAGCTGAAACTTTACCAGAACATGAAGAATCAGTAGCCGaagttgaagatgaacacaaaaggCTTGCAGTGAACCACAGAGAACCACCTGAAGACCACAAACAACTTCCTGTTAAAAACACAAAACCCCTTGAGCACCCAAAACCTGAAGAAGAACATGTGCAGAGCACCTCAGCAAAGCACAACACTGAACTTGAGAGGAAACATCAGTGGCACTTGTTCTCTCCAGTTACCTTCAGTCCAACCAGCCCACCTTCAAACAAACAGTCCCACAGTCTGTTTAACTTCAGAGAAGAGGAGGACGAGGCAGACAACACCCTCAGAGCTGCTTTTGTGGATGAGCAAGGACTGGTGGAGAGCTGTTGTGTGGCCGGGCAGAAATGGGCTGAGGAGAACCAGCAGTGTAACCGAATGGCTGTCAAAACAGAAGACATCAGCTCTGTGTGTGGTGTGGTCCAGCAACAGTGTTGTTCGGGTGCTCTGAGAGAGAGCAGGTGTCAGGCTGGCATCATTGCAGCAAAGGCCGGACGTGCCTGTCAGAGAAACAGCCCGCTCTGTGGCGAAGACTCACAAACAGACTGCTGTAACTGCTGTGCGCTGGGTCTGCGTTTGCGGAGGGAAGGTAAAGGTTGTGAAGCTCATCAATACCTGAGTTACCCATGTGGACACGTCTTCCTCACGTGCTGTGAAGATGCTGAGGAAGGTCTTCCTCTACCCACCATCAAGAAAAAGCAGAGGCCTCAGCCAACCGCTCTTCCAAAGAGAGTATCAGACAGTCAGTTTTGGAAGCAGGCGCTGTCAGCCGGGGATGTGGATCCCGCAGTTAATTCACTGGAGGATTTGGAGCATGGTGACAGATGCCAGAGATTTGCTTCGCTCTGCCATCACACCTGCATCAACACCCGCGACTCCTACCTGTGCGCCTGCCACCCCGGGTACACACTCCTGCAGGATGGCCACACCTGTGTGTCAGAGAACCAGGAGGAAGACAACAGAGTTAGCGAGGAAGACCGGATCCCTACTACAGTTCCAGATAAACAACAAACTACCACTCAGATGCCGGTCTTACATAACCCCTGTGCAGGTAATGGGCTGTGCTCTCAGAAGTGTACTGTGGTTCAAGAACTGGCCCAGTGCTCCTGTTTCCCAGGATTCTTTCTGAAACCCGATGGACACACCTGTGAAGATGTGAATGAGTGCCTGAACGGCAGACACAATTGCTCCCTGGACGAGGTGTGTAAGAACCACGAGGGCTCCTACCAGTGTGAGCGGGTCAATGAGATGTGCCATAAGGGCTTTATTCACAAACACAATAGAGATTGTGTGGatgtgaatgagtgtgtgacgAACACACACACCTGTCGGGCAGACGAGCGCTGCGTGAACTCAGTTGGAGGATTTGTGTGCGAAAGGATGATCTTGTGTTCGAGTGGTTACCAGCTGAGAAATGGAGTATGTGAAGACATCGACGAGTGTGTTATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGTACGACTGGCTTCAACTGCATAAATACTGTGGGCTCCTATACCTGTCAGCGCAAGATCATCATGTGCAGTCGAGGTTACCATTCCAGTCCAGATGGAGCTCGATGTATTGATGTGGATGAATGTCAGACGGGCACACACCGCTGTGGAGAAGGCCAAATCTGTCACAACCTGCCCGGCAGCCACCGCTGTGACTGCCAAACCGGCTACCAGTACGACACCATCCGCCAGCTCTGTGTGGATGTAAATGAGTGTTGGCGGTACCCGGGCCGACTCTGTGCCCAGACCTGTGAAAACACGCCAGGCTCGTACCAGTGCTCCTGTACCACAGGCTTCTCCTTGGCCTTTGATGGCAAGAACTGTGAAGATATTAATGAATGTGACAGCAATCCCTGCAGTCAGGAGTGTGCAAACATCTACGGCTCTTACCAGTGTTACTGCCGAGCAGGCTACTACCTGAAAGAGGACGGCCACACTTGTGAAGATATTGATGAGTGCTCACAGAGCATTGGAAACCTGTGTGCGTTTGAGTGTGTGAACGTGCCAGGGAGCTACACATGTGCCTGTCCTCCTCATGGTTATTCAATGTCAGCTAATGGACGCACTTGTCAAGATATTGATGAATGTGCCATTGGATCGCACAATTGCTCTGCCTCCCAGACTTGCTTCAACATCCAAGGAGGCTTCCGTTGTCTGTTGTTTGAATGTCCTGACAACTACAGGAGGGTGTCGGACATACGCTGTGAACGAATGAGTTGCCCCAACTACCAACAATGCCAGACCATGCCATTACGCATCACCTACTACCAACTGAGCTTCCAGACCAACATCGTCATCCCAGCTCAGATCTTTCGAATTGGACCTTCACCCGCATACTCCGGCGACaacatcatcatcagcatccCGCGCGGAAACGAAGACGGCTACTTCAGCACACGGAAGCTCAACAGCTTCACCGGCGCCGTTTACCTACACCGGCAGGTTCGAGAGCCACGGGACTTCTTTATCGACGTAGAAATGAAGCTGCTACGTCAAGGAACTTTCACAACTTTCCTGGCCCGCATCTACGTGTTCATCACAGCAAGCTCTATGTGATGTGATGACACCTTTGATTTCGCATGGTGCTAAACTCTTCAGGCTTCCGTCTTGAAGTTGTTTGTCATCTGGCAGATCCTTAAGGCTTCTGTTTGCCTAACGGATTTTTGCTCAGAGAGACTTTGATGGGACTCTCCCACTGGGATCCAACCGCTTGTTTTGAGTAGAGCGAGAACAAACAGGACAGAGCATAGAGACTGACAGAAACATTTGGCTTTTAAAAATCCTAGTTTTTCCTCTTCAAAGTATCAAAAGTACTCTACACCAGATGCTATTTATACCGCACCAATTTATCTTGATTGCCTGAAACTGCTTTTTATAGCACTTCATTACTTTTTCCTAACAACACAAGGTTTCTCCTAGGGGGTTGGCAGAATAGAGCTGAGGTAGAATTAGGGGTTTTGTAATGGCTGTCACAAATCCTCCATTCAACTGCTGTGCCGTTTAAACGTCTAATCATTTCACAGCTCATCCGATACAGCaaataactgtatttaaaaaCGTACCTGTGTATAATCCCCACGAGTATACCTCAGTTCACCTCTGCAAACGAGAGACATTGTTTTTGTAATCATTGTTAGCAGTTAAAAAGCtgtatgattgttattattactgtttcaAACGGGCTCCGTTCGTAGCTCTTGGTGCTAATATACGGTTTTGGAAACATTTGACACGCATACATGAAGAGTGTGTAAGCTCCAAAGCAGCACTGAGAATATTGTATTGATAAACGTCAATTTGTATGTCTTTACATTGTAATACTACACCTGTTTTGATGTATTACTGTCTTGAAAATTCATCTCAGGGTTATAGCTTCAAATCATCTCAAGATATGTTGATATCTGATATCAGAACACATTCCTACTCATTATCAAAACATATTAGGTAAACTCATGAAACAACCAAATGCATCAGTATTGCATAAGTATATTAATGCAAGACATATTATCTCCCTTAATGGATTCAGTTCCTCAATAAAGCAACACCATCATTCCTTC
>TCONS_00006859
GTTCAAGAACTGGCCCAGTGCTCCTGTTTCCCAGGATTCTTTCTGAAACCCGATGGACACACCTGTGAAGatgtgaatgagtgtgtgacgAACACACACACCTGTCGGGCAGACGAGCGCTGCGTGAACTCAGTTGGAGGATTTGTGTGCGAAAGGATGATCTTGTGTTCGAGTGGTTACCAGCTGAGAAATGGAGTATGTGAAGACATCGACGAGTGTGTTATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGTACGACTGGCTTCAACTGCATAAATACTGTGGGCTCCTATACCTGTCAGCGCAAGATCATCATGTGCAGTCGAGGTTACCATTCCAGTCCAGATGGAGCTCGATGTATTGATGTGGATGAATGTCAGACGGGCACACACCGCTGTGGAGAAGGCCAAATCTGTCACAACCTGCCCGGCAGCCACCGCTGTGACTGCCAAACCGGCTACCAGTACGACACCATCCGCCAGCTCTGTGTGGATGTAAATGAGTGTTGGCGGTACCCGGGCCGACTCTGTGCCCAGACCTGTGAAAACACGCCAGGCTCGTACCAGTGCTCCTGTACCACAGGCTTCTCCTTGGCCTTTGATGGCAAGAACTGTGAAGATATTAATGAATGTGACAGCAATCCCTGCAGTCAGGAGTGTGCAAACATCTACGGCTCTTACCAGTGTTACTGCCGAGCAGGCTACTACCTGAAAGAGGACGGCCACACTTGTGAAGATATTGATGAGTGCTCACAGAGCATTGGAAACCTGTGTGCGTTTGAGTGTGTG
>TCONS_00006860
TCTTGAAGCTGTTATTGAGCCACACTGCCACCTACTGTGGGGTTTTAACTTGTAATTGAGGATGGTTGTGATCTCTGTCCAAACCCATCTCCTCAATCAAAGCCCTCAGATGGGGCTCCGCTATTCATTATGCTGACATGCTTGCCAAATTTGGTGAGATTTACAGATTTTCCTGAAGGCCTTAAGAGGGGAAACCTAATTTGTTTGGACCTATAACAGCATCAGTCTCAAAAGCTAAACAAATCTCTCAGTGCAGGAACCCGACTGGATGGCGTCTGGCTGTCCGCTCCAGTGACCCATTTTGACATCTGCTGTGCTCTTTCTCTTCTAGACATCGACGAGTGTGTTATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGT
>TCONS_00006861
GATCTCTGTCCAAACCCATCTCCTCAATCAAAGCCCTCAGATGGGGCTCCGCTATTCATTATGCTGACATGCTTGCCAAATTTGACATCGACGAGTGTGTTATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGTACGACTGGCTTCAACTGCATAAATACTGTGGGCTCCTATACCTGTCAGCGCAAGATCATCATGTGCAGTCGAGGTTACCATTCCAGTCCAGATGGAGCTCGATGTATTGATGTGGATGAATGTCAGACGGGCACACACCGCTGTGGAGAAGGCCAAATCTGTCACAACCTGCCCGGCAGCCACCGCTGTGACTGCCAAACCGGCTACCAGTACGACACCATCCGCCAGCTCTGTGTGGATGTAAATGAGTGTTGGCGGTACCCGGGCCGACTCTGTGCCCAGACCTGTGAAAACACGCCAGGCTCGTACCAGTGCTCCTGTACCACAGGCTTCTCCTTGGCCTTTGATGGCAAGAACTGTGAAGATATTAATGAATGTGACAGCAATCCCTGCAGTCAGGAGTG
>TCONS_00006862
ATACGAACTCATAACTGTGGGATGGGCTTCCAGTGTCAGAATACTGATGGTTCATTCACGTGTAAGCCGAAACAACGCTGTCTCACAGGCTTCACTCAGGACTCACATGGCAACTGCATTGACATTGATGAATGCAGCAGTGTGAGAGAACCATGTACGACTGGCTTCAACTGCATAAATACTGTGGGCTCCTATACCTGTCAGCGCAAGATCATCATGTGCAGTCGAGGTTACCATTCCAGTCCAGATGGAGCTCGATGTATTGATGTGGATGAATGTCAGACGGGCACACACCGCTGTGGAGAAGGCCAAATCTGTCACAACCTGCCCGGCAGCCACCGCTGTGACTGCCAAACCGGCTACCAGTACGACACCATCCGCCAGCTCTGTGTGGATGTAAATGAGTGTTGGCGGTACCCGGGCCGACTCTGTGCCCAGACCTGTGAAAACACGCCAGGCTCGTACCAGTGCTCCTGTACCACAGGCTTCTCCTTGGCCTTTGATGGCAAGAACTGTGAAGATATTAATGAATGTGACAGCAATCCCTGCAGTCAGGAGTGTGCAAACATCTACGGCTCTTACCAGTGTTACTGCCGAGCAGGCTACTACCTGAAAGAGGACGGCCACACTTGTGAAGATATTGATGAGTGCTCACAGAGCATTGGAAACCTGTGTGCGTTTGAGTGTGTGAACGTGCCAGGGAGCTACACATGTGCCTGTCCTCCTCATGGTTATTCAATGTCAGCTAATGGACGCACTTGTCAAGATATTGATGAATGTGCCATTGGATCGCACAATTGCTCTGCCTCCCAGACTTGCTTCAACATCCAAGGAGGCTTCCGTTGTCTGTTGTTTGAATGTCCTGACAACTACAGGAGGTTGCCCCAACTACCAACAATGCCAGACCATGCCATTACGCATCACCTACTACCAACTGAGCTTCCAGACCAACATCGTCATCCCAGCTCAGATCTTTCGAATTGGACCTTCACCCGCATACTCCGGCGACaacatcatcatcagcatccCGCGCGGAAACGAAGACGGCTACTTCAGCACACGGAAGCTCAACAGCTTCACCGGCGCCGTTTACCTACACCGGCAGGTTCGAGAGCCACGGGACTTCTTTATCGACGTAGAAATGAAGCTGCTACGTCAAGGAACTTTCACAACTTTCCTGGCCCGCATCTACGTGTTCATCACAGCAAGCTCTATGTGATGTGA

Function

symbol description
fbln2 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including cardiovascular system; hypochord; intestinal bulb; mesoderm; and tail bud. Orthologous to human FBLN2 (fibulin 2).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060711-1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including cardiovascular system; hypochord; intestinal bulb; mesoderm; and tail bud. Orthologous to human FBLN2 (fibulin 2).

Ensembl:

ensembl_id ENSDARG00000015156

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006858 False 5443 mRNA 0.47 18 27274355 27383732
TCONS_00006859 False 912 mRNA 0.51 8 27347076 27374532
TCONS_00006860 False 504 lncRNA 0.46 2 27363990 27364956
TCONS_00006861 False 661 mRNA 0.51 6 27364059 27372368
TCONS_00006862 True 1224 mRNA 0.51 8 27364338 27382736

Neighbor

gene id symbol gene type direction distance location
XLOC_003499 NA coding upstream 65969 27207196 ~ 27208386 (+)
XLOC_003498 hdac11 coding upstream 76903 27133560 ~ 27197452 (+)
XLOC_003497 NA coding upstream 565275 26702957 ~ 26709080 (+)
XLOC_003496 si:dkey-57n24.6 coding upstream 590643 26669724 ~ 26683712 (+)
XLOC_003495 dynlrb1 coding upstream 658747 26604224 ~ 26615608 (+)
XLOC_003501 NA coding downstream 20139 27403871 ~ 27414474 (+)
XLOC_003502 NA coding downstream 130128 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 coding downstream 136724 27520456 ~ 27520573 (+)
XLOC_003504 barx1 coding downstream 159361 27543093 ~ 27545719 (+)
XLOC_003505 CR931782.2 coding downstream 241344 27625076 ~ 27649659 (+)
XLOC_003369 CR854846.2 misc upstream 11151273 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 14562359 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 14580092 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 14588756 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 14594327 12679732 ~ 12680028 (+)
XLOC_003490 NA non-coding upstream 1040286 26226082 ~ 26234069 (+)
XLOC_003489 NA non-coding upstream 1078210 26188517 ~ 26196145 (+)
XLOC_003488 CR318604.1 non-coding upstream 1196294 26077947 ~ 26078061 (+)
XLOC_003506 NA non-coding downstream 345508 27729240 ~ 27731175 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1394376 LOC106566675 non-coding NC_048580.1 CM023234.2 58788659 ~ 58790410 (-)