XLOC_003501


Basic Information

Item Value
gene id XLOC_003501
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27403871 ~ 27414474 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006863
ccaaataaaataaaacttttctgGAAAATAGAGTAATTTGTTGCTTGTCATTTTACCTGACGGCGCTAATTTACTCTtaggccactagagggcgctccaCTAATACTGACTGAGGGCACCAAAACAAGACAAGCTGTAGTATGTAGTGTGTGTGATGATCTTCAAGTTCAAGAGATTCAAAATCACCGGTCTCACTTCAAATAAAAGCAGAGGCTGGAGAAAAATTGCTTTTCCGTGATGTTTACAGAAGCGGCAACTTGCGGATTAAGATGCAAGGCAACAGAATTCTGGTTTACGCAGTCTGTCAGTCCGCGAGCTCATTCATCCGCCCAGGCCGTGCAAGATCCCATCACACCTCAGAGTTGCTTTTGTCAGGCGTATTCCAGAAACCACTAATGGTCGCAGTTAAAACTTTAGACTACTCGGTTGCTGCCCACCTCAAAATGACTAAGTTGGCTGTACCTGAAAGACAGcattgtgtgtgtgaaaaagtccACGGTGACAGACAGCAGGATAGGCCTTCAGTGGACTTGCTTGAGTTATATTTGACTTTgtgtattattgtttattttaattcagtGTTCATGACTTTTATCATTCAATATTATAAGATTTTTGTATATCATATTGTTTTAAGCAGTAATCACAGTTAGGCCAATAAAAAATGTGGTTTTGTATGTAATGGCAAAACCATCACTTCCTTCTTTGGTGTCACATTGCCAGTTAGAATTTTTTCT

Function

GO:

id name namespace
GO:0012505 endomembrane system cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006863 True 737 lncRNA 0.40 3 27403871 27414474

Neighbor

gene id symbol gene type direction distance location
XLOC_003500 fbln2 coding upstream 20139 27274355 ~ 27383732 (+)
XLOC_003499 NA coding upstream 195485 27207196 ~ 27208386 (+)
XLOC_003498 hdac11 coding upstream 206419 27133560 ~ 27197452 (+)
XLOC_003497 NA coding upstream 694791 26702957 ~ 26709080 (+)
XLOC_003496 si:dkey-57n24.6 coding upstream 720159 26669724 ~ 26683712 (+)
XLOC_003502 NA coding downstream 99386 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 coding downstream 105982 27520456 ~ 27520573 (+)
XLOC_003504 barx1 coding downstream 128619 27543093 ~ 27545719 (+)
XLOC_003505 CR931782.2 coding downstream 210602 27625076 ~ 27649659 (+)
XLOC_003506 NA coding downstream 314766 27729240 ~ 27731175 (+)
XLOC_003369 CR854846.2 misc upstream 11280789 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 14691875 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 14709608 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 14718272 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 14723843 12679732 ~ 12680028 (+)
XLOC_003490 NA non-coding upstream 1169802 26226082 ~ 26234069 (+)
XLOC_003489 NA non-coding upstream 1207726 26188517 ~ 26196145 (+)
XLOC_003488 CR318604.1 non-coding upstream 1325810 26077947 ~ 26078061 (+)
XLOC_003507 BX601648.2 non-coding downstream 324015 27738489 ~ 27744282 (+)

Expression


Co-expression Network