LOC110510463 (LOC106590758)


Basic Information

Item Value
gene id LOC110510463
gene name LOC106590758
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3105399 ~ 3128798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953928.1
GGAAAGTACCGGAAGAATCCACTCCTGACACAGATGTTGACAAAAGGACACAAACATGGCATTTGAAAACAACACTTGTGGACGAGTtgttttttgtgttttctttctttctgtgtttCGCCTCTCTTATCCGAGTCAACAACGTCTCGAAACACCTCGGAGGCCATATAGTGCACTAACCCAGAAGACATCTTAGAAGTGGCAGACAGTAGTACTGGTGGTGTCATGGTGGTAGTGCGTCACACCTTACACACAATCCACCTGTCTGAACTTTTGTAATGACTTGAAATATGAATGCAGATATTTAACCCCAAACATTGATTCAACTTTTACAACGCCTgtgttttaaaaaatgtgaaaaaaagacAAGACACAAAATGCAATTTGAATCGGTATAGGTCATCTGGCCACTTGTTATGGTAAACATCTAAGGGACGGGGCGGGAGAAACCCCGTCACCACTCCCACATTCATCACTATGGATGCAACATCTAGCCATCCATGGGATAAAAAAATTGTTTTCAATgtgaaaagtaaaaaaaatatgcagGTACCATccctgacaaaaaaaaaagttggTTTCTCGTTTGATTATTATTGCATTTGCAATGAACATATGAATATGCGCGGGGATACTCATACGGTTTGCAACAAACCCAGAATGCTTTAGAAAACACTCTCAATGGGATGTCGTGGTAAAGGTCAATGCGGAAGGTCAGTTCAGATGACCAAACATACGCTGTATTACCAAGACTAGACTGAAATGTTCCTGACTGGCCGAGTTACAGCGTTGACCTAaactttacttttgatacttaagtatattttaaacaaattacatttactttttataTCTAAATATATTATTTAAACCAAAATAATTTTATTGAAGTCATATTTTACTGTGCGACTTTCACTTTGAGTCGTTgtctattaaggcatctttacttttactcaagtatgacacttGGGTACTTTTTCCCACCACGGCCCTCATACTGAAACGGAAAGGGTGTGAATTGTTTACAGCAGAGCCACTTTATACAGCAGCCGGTTTACTGCTGTTAATTGAGGTCAGGGGAAGGTGCTGACGGGAGTCTTTGGAAAGTACCTCAACCTCCCTGACACAGGTGAAGGTGGAAGGACACAAACATTGAGATTGAACATTTGAAAACAACACTCTTGTAGACAGCATGGAAAGGCAAATGAGGCCAGCAAGTTATGACATGAGTGGACAACGCAGAGCTTTATTGCTAATTGTCAGGGACAAGGAGAAGATGAAGAGTAACCGTTGCGGTTTTGATGTTGACCGTCAAACAATGGAGAAGTTTTTTGAGGGGTTTGGTTTCCAGTATCACAGTGTGCTGGACGAAACAGCTCAGGAAATGAAGGAGGAAGTAATAAACTTCAGAAACGGCATCAACAGTAGCAGCGGGAACATcagctgtgtgtttgtggtgaCTTCGTCTCACGGACGCCGGGACGGCATCATAGGTGCAGATAAAAAGACCCCGGCAGTAAAAGATATAATCGAACCGTTTGGAGACGAGCTGTGTCCCAAGACGAAGGGGAAACCTAAGGTCTTCATCATAGATGCCTGCAGGGGGAGTAACCATGATACTGGAGTTCACTTTGATTCTGCTGCTGATGAAAAACTATCAAAGGAAGCCATGGCCACAAAAGAGTACCGGTCGACTCGGGTGCCACCGTGCATCAATGACATGCTGGTTGCATATGCAGCCATGACAGATTACGTGGGCATGATGAACAGCACCTCTGGGTCACGTATGATTCACAACATTAGTCTAGTGTTTTCCTCACCTGGTGCAACAGAAGAACATGTCTACAACTTGTTTGTGAAGGCCAACGCAAAGATGGTGGCAACACCCGTAGATGTCACAGTCGATGAAGGGAAGCCGACTCAGAGAACGGAACGTCGTAAAATAATTATGACAATGGAATCCACCCTCAGGAAAACCCTTTACTTGAGAAGTTCAAATGAATCTGGTGTTAAAACTATTGAACAGAAGGGAAGGAAGTAGATTTATTTGAGCTTCCTGTTCTCAGCATTACTTGTTACATGTTATTTCCTTGCTCTATTTGTCTACAAGGTCTTCCCACTGTAATATTCCTCCATTTCTTTGGGCATTTTAAGAAATTCTTAAACCAATAGTCAAATAAATGTACAGATTCTTCGGTGGTCACCAACCTTTAATCTACCACACAGATGGTTGTTTTAAAAAcacaacttaaaaaaaaaaacttgagccTTAACATGAACCAATTAAAGACAGGACTGGAGCATTGGGGTTTGTGCAGTAGGCAAGgcacaatacattatcactgcatattggctgtgcttggaattgccctgccaatgctgTTCTTCACAGACCATTTTGAAGTATGATATGATAAATgtgtaggtatatatatataacgcCGCTGTTAATAACGACACGTGTTCTATGACACGTGAGACACAGCTGAGTGAGCGTGGTCATTTCtgttttactggactgatggcctgcagtctgaggggagggagggaagaggctgCCTCTCACCTGACTCAccgtctctctgctctccctccctaaCCTTTAGAAAAGGGGACACAGCTGAGTGAGCGTAGTCATTTCtgttttactggactgatggcctgcatATGACGGTCAgtctgaagggagggagggaagaggctgCCTCTCACCTGACTCAccgtctctctgctctccctccctaaCCTTTAGAAAAGGGGACACAGCTGAGTGAGCGTGGTCATTTCtgttttactggactgatggcctgcatatgacggtcagtctgaggggagggagggaagaggctgCTTCTCATCTGACTCAccgtctctctactctccctccctccctttagaAAATGGGACACAGCTGATGGTGAAACTCAAGAGCGTTATTTCTGCCTCGTGCACCAATTCATGATGTTACTCCTGTGACCAGAGGAAGTGAAATATTCCTCCATATTAAAAAGACGAGCCTCTAATAATAACAAGGCAAGTTTATGGGATCACTTTCCTACTCCTTCAtagcagctgcagtgctggttgtagcgtcAGTGGAAGTAGGAAGAAGGTGCATTTTCTGGCTTATGAATGTGTGTTGACAGTCGTGAATAACAGCAAACATGAACttcctcataaaaacagcagctcttctTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGagtctctctagtcgtggttttaaacgttttttgaaatctcacagtgtAAACGTTGCTTTTCGAGGCTTCGGTCTATAGTCTACGGCTCgaggaaactgtgcagacacAGTGATTGGTcagcggtaggcctataggtgcacttgatttgttCTCTGGGCCTGCCGGGTAGGCGGAGttttaccttcagacacatgaaatggttcaaaatgggaacactttgccttcccTGGCGCTaaggctgctgaatcaagtgcacctaaaCGCCAACAGTGTCAaacccaaaaaatatataatatagcGCTTTatccacagagtttctaaacccagaggtgcAACATCGGGAGACTTCCGTCAACACTTGTGAAACAGATGAAACAGACCAGAACCGGAGGGGGTTTGacaagtcaatgagagaagtgaaaagtCTTTCCTTTAGTTGTACGTTTTCTCCCGATCTAAAGGAACATCCTCAGATTTGAGCCAATGTCTTCAGTGGTTGAACGTGTCTTTACTAGAACCTTGTGAAAGTGGCAAACTGAAACCTTTTCATTTTTTTCGTCAAAAAACAACGTTATATCGAAAGGAGTGCTTTTGAATCGCCGGTCTGCACATGCTCAGTTCAGTGCCAGACGGCCGTTAGACCCGATGACCTGTTCCTATGCGTGAGCTTAGCTAGCCGACGTCGCCATGACGTCGCCATGACGTTGCAAACAAGTGCgatcggggatttctattggagaagcagtatTAGTCTTCATACTGTCTCTGGTTtatctgtgttttttttaaagaagtgtTTGGTGTTGCCTTGGAGaccagttggtgaccactgacTTAAACTGTTAAGTTGCAACCATTTAATACCCTTTTTTTTGGTGAAAAATGTCATTGTTGTTATATTTGAATGTTTTCTTCTCGACACTATAGAGAAATAAAAAGCTTTCACATGA
>XM_036953929.1
GGAAAGTACCGGAAGAATCCACTCCTGACACAGATGTTGACAAAAGGACACAAACATGGCATTTGAAAACAACACTTGTGGACGAGTtgttttttgtgttttctttctttctgtgtttCGCCTCTCTTATCCGAGTCAACAACGTCTCGAAACACCTCGGAGGCCATATAGTGCACTAACCCAGAAGACATCTTAGAAGTGGCAGACAGTAGTACTGGTGGTGTCATGGTGGTAGTGCGTCACACCTTACACACAATCCACCTGTCTGAACTTTTGTAATGACTTGAAATATGAATGCAGATATTTAACCCCAAACATTGATTCAACTTTTACAACGCCTgtgttttaaaaaatgtgaaaaaaagacAAGACACAAAATGCAATTTGAATCGGTATAGGTCATCTGGCCACTTGTTATGGTAAACATCTAAGGGACGGGGCGGGAGAAACCCCGTCACCACTCCCACATTCATCACTATGGATGCAACATCTAGCCATCCATGGGATAAAAAAATTGTTTTCAATgtgaaaagtaaaaaaaatatgcagGTACCATccctgacaaaaaaaaaagttggTTTCTCGTTTGATTATTATTGCATTTGCAATGAACATATGAATATGCGCGGGGATACTCATACGGTTTGCAACAAACCCAGAATGCTTTAGAAAACACTCTCAATGGGATGTCGTGGTAAAGGTCAATGCGGAAGGTCAGTTCAGATGACCAAACATACGCTGTATTACCAAGACTAGACTGAAATGTTCCTGACTGGCCGAGTTACAGCGTTGACCTAaactttacttttgatacttaagtatattttaaacaaattacatttactttttataTCTAAATATATTATTTAAACCAAAATAATTTTATTGAAGTCATATTTTACTGTGCGACTTTCACTTTGAGTCGTTgtctattaaggcatctttacttttactcaagtatgacacttGGGTACTTTTTCCCACCACGGCCCTCATACTGAAACGGAAAGGGTGTGAATTGTTTACAGCAGAGCCACTTTATACAGCAGCCGGTTTACTGCTGTTAATTGAGGTCAGGGGAAGGTGCTGACGGGAGTCTTTGGAAAGTACCTCAACCTCCCTGACACAGGTGAAGGTGGAAGGACACAAACATTGAGATTGAACATTTGAAAACAACACTCTTGTAGACAGCATGGAAAGGCAAATGAGGCCAGCAAGTTATGACATGAGTGGACAACGCAGAGCTTTATTGCTAATTGTCAGGGACAAGGAGAAGATGAAGAGTAACCGTTGCGGTTTTGATGTTGACCGTCAAACAATGGAGAAGTTTTTTGAGGGGTTTGGTTTCCAGTATCACAGTGTGCTGGACGAAACAGCTCAGGAAATGAAGGAGGAAGTAATAAACTTCAGAAACGGCATCAACAGTAGCAGCGGGAACATcagctgtgtgtttgtggtgaCTTCGTCTCACGGACGCCGGGACGGCATCATAGGTGCAGATAAAAAGACCCCGGCAGTAAAAGATATAATCGAACCGTTTGGAGACGAGCTGTGTCCCAAGACGAAGGGGAAACCTAAGGTCTTCATCATAGATGCCTGCAGGGGGAGTAACCATGATACTGGAGTTCACTTTGATTCTGCTGCTGATGAAAAACTATCAAAGGAAGCCATGGCCACAAAAGAGTACCGGTCGACTCGGGTGCCACCGTGCATCAATGACATGCTGGTTGCATATGCAGCCATGACAGATCGCCCAACACTGCCATTGGTAACGTTCATTTGAAGTGAGTGTTGAGATGTTTTTAACCactcctgaacctgtgaccaggaACAAGCTACACGGAGGCAACGCCAGAATAAATGATTTAGTGATTCTGTCTCTTCTCATCGAAATGTACCGAGCTGAGATTGCTGAATTCCCCACATGTTTAACATTCTGTTGGTGGCAATCATATGGAATAATCATTTAAATGGACGTTCCTGTGGGATATAATTAGAATAGTTTTCATTAGAATGGCCATAATAAACAGATACAGAGATAATGGACAGCCTTGTTCTAGTCGTCTTAACAGCTCCATACTTTCTGAGAGGTAAACATTAtatactattttacacctggggctatt
>TU1812971
tctgaggggagggagggaagaggctgCCTCTCACCTGACTCAccgtctctctgctctccctccctaaCCTTTAGAAAAGGGGACACAGCTGAGTGAGCGTGGTCATTTCtgttttactggactgatggcctgcatatgacggtcagtctgaggggagggagggaagaggctgCTTCTCATCTGACTCAccgtctctctactctccctccctccctttagaAAATGGGACACAGCTGATGGTGAAACTCAAGAGCGTTATTTCTGCCTCGTGCACCAATTCATGATGTTACTCCTGTGACCAGAGGAAGTGAAATATTCCTCCATATTAAAAAGACGAGCCTCTAATAATAACAAGGCAAGTTTATGGGATCACTTTCCTACTCCTTCAtagcagctgcagtgctggttgtagcgtcAGTGGAAGTAGGAAGAAGGTGCATTTTCTGGCTTATGAATGTGTGTTGACAGTCGTGAATAACAGCAAACATGAACttcctcataaaaacagcagctcttctTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGAGTCTCTGTCTTCAGTGagtctctctagtcgtggttttaaacgttttttgaaatctcacagtgtAAACGTTGCTTTTCGAGGCTTCGGTCTATAGTCTACGGCTCgaggaaactgtgcagacacAGTGATTGGTcagcggtaggcctataggtgcacttgatttgttCTCTGGGCCTGCCGGGTAGGCGGAGttttaccttcagacacatgaaatggttcaaaatgggaacactttgccttcccTGGCGCTaaggctgctgaatcaagtgcacctaaaCGCCAACAGTGTCAaacccaaaaaatatataatatagcGCTTTatccacagagtttctaaacccagaggtgcAACATCGGGAGACTTCCGTCAACACTTGTGAAACAGATGAAACAGACCAGAACCGGAGGGGGTTTGacaagtcaatgagagaagtgaaaagtCTTTCCTTTAGTTGTACGTTTTCTCCCGATCTAAAGGAACATCCTCAGATTTGAGCCAATGTCTTCAGTGGTTGAACGTGTCTTTACTAGAACCTTGTGAAAGTGGCAAACTGAAACCTTTTCATTTTTTTCGTCAAAAAACAACGTTATATCGAAAGGAGTGCTTTTGAATCGCCGGTCTGCACATGCTCAGTTCAGTGCCAGACGGCCGTTAGACCCGATGACCTGTTCCTATGCGTGAGCTTAGCTAGCCGACGTCGCCATGACGTCGCCATGACGTTGCAAACAAGTGCgatcggggatttctattggagaagcagtatTAGTCTTCATACTGTCTCTGGTTtatctgtgttttttttaaagaagtgtTTGGTGTTGCCTTGGAGaccagttggtgaccactgacTTAAACTGTTAAGTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953928.1 False 4288 mRNA 0.43 6 3105399 3119992
XM_036953929.1 False 2126 mRNA 0.42 5 3105399 3128798
TU1812971 True 1512 lncRNA 0.46 2 3118237 3119894

Neighbor

gene id symbol gene type direction distance location
LOC110517772 LOC106610548 coding upstream 13698 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 coding upstream 102343 2888963 ~ 3003056 (+)
LOC118941407 LOC106591540 coding upstream 104543 2951647 ~ 3001920 (+)
LOC118941401 LOC106609853 coding upstream 196485 2906817 ~ 2909482 (+)
LOC110518136 LOC106592283 coding upstream 293707 2770293 ~ 2811692 (+)
LOC110511406 LOC106588734 coding downstream 7850 3136648 ~ 3139833 (+)
trnae-cuc-282 NA coding downstream 93120 3221918 ~ 3221989 (+)
trnae-cuc-283 NA coding downstream 93301 3222099 ~ 3222170 (+)
trnae-cuc-284 NA coding downstream 94515 3223313 ~ 3223384 (+)
trnae-cuc-285 NA coding downstream 94697 3223495 ~ 3223566 (+)
G1583655 NA non-coding upstream 593 3104490 ~ 3104806 (+)
G1583653 NA non-coding upstream 4378 3097603 ~ 3101021 (+)
G1583648 NA non-coding upstream 8180 3095425 ~ 3097219 (+)
G1583649 NA non-coding upstream 8438 3096163 ~ 3096961 (+)
G1583675 NA non-coding downstream 25081 3153879 ~ 3154202 (+)
G1583686 NA non-coding downstream 63094 3191892 ~ 3193229 (+)
G1583783 NA non-coding downstream 161459 3290257 ~ 3290466 (+)
LOC110534750 ma7d1 non-coding downstream 184261 3309693 ~ 3314825 (+)
G1583811 NA non-coding downstream 194784 3323582 ~ 3372508 (+)
G1583215 NA other upstream 290105 2765199 ~ 2815294 (+)
G1583003 NA other upstream 904526 2198928 ~ 2200873 (+)
LOC110534752 LOC106602173 other downstream 303918 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 354848 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 489040 3609578 ~ 3622792 (+)
G1583951 NA other downstream 511851 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 559370 3687991 ~ 3692012 (+)
G1583658 NA non-coding upstream 3973 3113982 ~ 3114264 (+)

Expression


Co-expression Network