XLOC_003502



Basic Information


Item Value
gene id XLOC_003502
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27513860 ~ 27526561 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008621
agatgttactgCATTGATCACTGATCTGCAGTTCACCaggaatttacatgagaacaaggaaGCATAGGTGTTCGTGGTTCATGGTAGAGAAACAGAAGTAGAATACCTGTCTCCATGTCAGTGTTGGACTCTCTGCTGGTGGAGTAGGGCAGATCACTCACCAAACTAACACCTGCTGCCATGACCGACACTGAAACATGGGAGCAAACATGCTGTTAACGCCTCAGACACAAAACAATGGCAGGGCAAACAGTAAAGACACAACATAAACGAGGAAGTTATATGGCTGGTTGCCTTGGAGTTTTCTCCCTTGGGAGGAAAATGTGCAATGTCTGTTGCTGTGTGTCACACACCAGATCTAGTGTCACTGCAACATAtaatgtatatgtactgtatatagtgaGGTGTTATCATTCTCCCCCCAGTTCATTCATGAAACATTAAAAGCAAC
>TCONS_00006864
TGATCACTGATCTGCAGTTCACCaggaatttacatgagaacaaggaaGCATAGGTGTTCGTGGTTCATGGTATGTCATTACCAgGTAGAGAAACAGAAGTAGAATACCTGTCTCCATGTCAGTGTTGGACTCTCTGCTGGTGGAGTAGGGCAGATCACTCACCAAACTAACACCTGCTGCCATGACCGACACTGAAACATGGGAGCAAACATGCTGTTAACGCCTCAGACACAAAACAATGGCAGGGCAAACAGTAAAGACACAACATAAACGAGGAAGTTATATGGCTGGTTGCCTTGGAGTTTTCTCCCTTGGGAGGAAAATGTGCAATGTCTGTTGCTGTGTGTCACACACCAGATCTAGTGTCACTGCAACATAtaatgtatatgtactgtatatagtgaGGTGTTATCATTCTCCCCCCAGTTCATTCATGAAACATTAAAAGCAAC

Function


GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008621 False 451 lncRNA 0.44 2 27513860 27526561
TCONS_00006864 True 452 lncRNA 0.44 2 27513874 27526561

Neighbor


gene id symbol gene type direction distance location
XLOC_003501 NA coding upstream 99386 27403871 ~ 27414474 (+)
XLOC_003500 fbln2 coding upstream 130128 27274355 ~ 27383732 (+)
XLOC_003499 NA coding upstream 305474 27207196 ~ 27208386 (+)
XLOC_003498 hdac11 coding upstream 316408 27133560 ~ 27197452 (+)
XLOC_003497 NA coding upstream 804780 26702957 ~ 26709080 (+)
XLOC_003504 barx1 coding downstream 16532 27543093 ~ 27545719 (+)
XLOC_003505 CR931782.2 coding downstream 98515 27625076 ~ 27649659 (+)
XLOC_003506 NA coding downstream 202679 27729240 ~ 27731175 (+)
XLOC_003507 BX601648.2 coding downstream 211928 27738489 ~ 27744282 (+)
XLOC_003508 alpl coding downstream 442273 27968834 ~ 28010171 (+)
XLOC_003369 CR854846.2 misc upstream 11390778 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 14801864 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 14819597 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 14828261 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 14833832 12679732 ~ 12680028 (+)
XLOC_003490 NA non-coding upstream 1279791 26226082 ~ 26234069 (+)
XLOC_003489 NA non-coding upstream 1317715 26188517 ~ 26196145 (+)
XLOC_003511 CR450786.1 non-coding downstream 915812 28442373 ~ 28447433 (+)
XLOC_003513 BX649345.2 non-coding downstream 991001 28517562 ~ 28520764 (+)

Expression



Co-expression Network