LOC110519316 (LOC106610378)


Basic Information

Item Value
gene id LOC110519316
gene name LOC106610378
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3290812 ~ 3295531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596462.2
gctatcgaagggaCATGAAAAAATCCTTGGAGCAAAAGGTACATGTTTATGTCGTAGCGTTGAGTTTAGTCTTCTCTACCGGATGTTGATCAACGTCGACCATTCAGCAATCGTGAGATTTCCGTGTATTGAGCCCTCGTCAGAACTGTCGACATGTCTCCAAACGGGTCTTTCCAGGCACAACTTTCTTCAATTATGGAGATGCTGACGACGTCTGCCGTTGCAGAGATTACAAAACTGGTCGATTACAGTTCTGCCCTACTATTCTCGGAGATATCCCGACAACAGGGAGAGAACGACGCTCTTCGGAAGGCATTGTACTGTATGCAAATCGAGCTCGGGACCGAGAGACCAAAGCGGGGCACCTCTTCTGTTGATATATCTTTAGAAGTTCAGCTTTGCGACGAGATCCAGAATAATAAAGGCGTGGGGGACCACAGGTTTCCGGACAAGCAGTTGGTTGTGAGTGAGAGGCACTATGGAGTGGATGCTGCCATCGAATTGGGAGAAACCAGTGCACCTCAGCGCAGAACAGTGAAGGAAGAATGTCCTGATGTGAAACAGGTCATTTTACAACCAGACCCTAAAGGTGAGGACAGGCCGGAGGAGGTTGTGAAAGCTAGTCACCCGGAGGAAGCAGAGCACATCATTATCGGTGGAGAAGGAAATGATGGCCTGTCCCTAAAAGATGATTTCCAGGCCATGGACGAGAGCCAGTCAGAGGCGTACCACAACTCCACAGCAGAGCCAGAGGAAGAAGACACCAGCCAAGACTTCAGCGAGGAGCTGGAGATGTGGGTCAAGTCTGAGCCGGGGTCAGAGAGCGACATCCCCAGCTTCACCCCCAGTGTCGCAGAAAACAAGATGGTCGACCACCTCACGGGCAGGGAAATGCACGCCTGTTCATACTGCAACAAACGCTTCAACTACCGTAGCCAGGTGATAATCCACGAGCGGGTTCACACGAGGGAGAGGCCGTTCGTCTGCAAGCAGTGCGGCAAGGGTTTCTCCCAGATTAACAACCTCAAGAAGCACCAGCTCTGtcacaggggaggggaggggaatcACGAGTGCGGGGAGTGTGGAAAGGCGTTCTGCCACACCCAGAGCCTGAAGAATCACATGGTGGCAGCTCACGGCTTCGGTTCAAGGTTGGACTGCGAGACGTGCGGCAAGACGTTTCACAATAAGAAAGCTCTCATCGCACACTCCACCAGTCACAGCAGGGCTTTTGGCTGCGAGATATGCGGGAAGGCTTTCGGTACGAAACAAACTCTTAAGACCCACCAGTTCACTCACACGGGGGAGCGTCCGTTCATCTGCAACTACTGCGGCAAGAGCTTTGCCTACCTCTGTAACCTTAAAACTCACAAGAGGGTTCACACTGGGGAGAAACCCTTTGGCTGTGAGCTGTGTGGCAAGTGTTTCACTCAGAAACACTGCCTGGAGAAACACTCGTGTGTAGATTAAAGAGCTGTAGATCTACAGAGTAACTGCAGCAAACTACCGTCTATGTTTACTTGTTGGCACCAAATGTTCCATGGCTGTAACGTTCTAATCTGCGTTCTGACTAGAATGTTGTGGTCTtgtagtctgggtaccagtctgtttagctaacGTTCCACTCCTTGTGCTATGGGCCACAGAGACTGGCCTTTCTTCAATCTCAGCGTTTAATATGCAGCTGGATTTTGTGAGGAGTTGCTGATTTGTTGTTGGAAATAACGTTATTGTTTGGCAATGGCACAGAGTACAAGGAGTGGTAtgttagctaaacagactggtacccatgCTAGTGGTCTTGTGCTATCATGGGGGAAATTCTAAACCTAAAACCAAGTTTGTTGAACTCTGCGTATTCTATTGCTTTGTTGAGGAGACTTGAGTGTTTCTAGTAAAGTGTCTACATGTGTGTGGGACAGATTGACCTGTGCATACATTTATTGTTTTTTCTTATAATATCACATTGTTATTTTAGGTAATTTGATCAATGTTTAGTTAAATTTTAGCTGACATTTTAATTTGCACGATTACGAAGTACATCGACAGTTACTACTACAACTTCTATCATTACTGTGGCGGTAACAATAGTGTGAGGGGATTGACACACAAAGCCAAATCATCCCTTCACATTCTGATTGGACAGAAATAGATCTCCCCCTGTTGAGTTAGGTTTCtctcaaagtttattggtcgtcACTAGCTTCCACAGCTACAAAGTCATAAACCCGCCCGTTTCTACAGTTTCTCTTTTTACAttttgattttaaacctaaccacactgctattcttatacctaaccctaaccttaacatgaagagcaaaaatgaaaatacatacatttttacgatatagccagTTTTGACCTTGCGGCTAGTGAAAACAAAGTTTATTCTGATCAAGGTCGTTTTCCCTACTGACCTTTTTTACTGTACTACAAATATTAGCCtacatatattttatttgtttgttttaacaAATGTAATTTTGACAAATCAGCTGGTATTCACTGTGTACATTATATCCAATCCATGCTTTAACGTTGTAATGATAAAATATTGTGTTCTGTCCTGATTCTGTCCACGTATATAGCATAACATATACTGTTGTATTTCATTGGGAAAACAGTTCTTGACCATACGTATTTCACTTGGTCTGGGTATTAAGTGTTGCTAGAATaactttttatttctttcacttTCATCTTAAAGctgcaatcagcagttgaaacaataacaaaagcgTCCGAGCCACCCCTGTTTTTGGTAACAAAGCACAAGGAGGGGGCTGAAGTAATGTAccaactctcaaattcatagacagagctatggatgcaaggactgaccaaccgtgatatcaaaatgatatttttaaccatgttttgaggctatgtagtgtttgtttacatttactttgtttacaaacattgggatttttaaaaagtatctatttggtgttcttggggtaaaaaaaatgtatttggggttctgatgaggtatgacagttgaatctagctcatgaggcatttataggTTATGTTCTTCAAGAATACATATTCATTTATACGtccaaaatggatgtagcaactgcggATTGCCCTTTTAAAAATTGCCATGCAAATCATACTTCTGTGGTTGATAAATCAGAATAGATCGCAGAGAGTACCAGTATAACAAACACTCCGCACTCTGCTGTGCCCACTCACGCTCTCATAAACCATTCAAGCCTGGTAGGTGGCGGAGGCGAGCTACACACTTTTCTGTAACGGGTACCAAATGGAAGATGCTGGAACAGAGCCAAGATACGGTATAGAATCACTGGCTGAAGTAGAGGAACTTTCGGGGAGTCGGTAGCCTAAATAATTGCATGAGATGAGTTCAATTGGATATAAAATGTACAATTAATGTGATAGCAAGCAATGTAGATAAATACAGCCACTGCAGTAACTAATTGAAAAGCCTGACTAGCTAACTTGATAACTAATGCTAACTTACTGTCCTCGTGGTACGACATGCTAACTATGCAAGTAGCTAGTACACAGGTTAACAGCTTTTATTACAACTAGCAAGCTATAATGTTTTAGTTTGCAAAATTACTTTAGCTAATGGTAGCTTATCCTCTCTTAATGCAGCCAACAGTATTTCAAGTGGACAGCATGCATTTATTGTGTAgtttgtgtgtggcaggcttacaatgatggcaaacaACAACATTTGTGTTTTGCTGAACCTGGTGCCAGAGGTGGTACGCAGCTGGagtttgaatgtttgaaggggtatgggactataaaaTGTTTGGGAACAACTGCCTTAGACAATTACCCCCTCCACAAAAATATACCATATGTTGAATGCCTAGgcctagttt

Function

NR:

description
zinc finger protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596462.2 True 3867 mRNA 0.43 4 3290812 3295531

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-374 NA coding upstream 695 3290046 ~ 3290117 (+)
trnae-cuc-373 NA coding upstream 876 3289865 ~ 3289936 (+)
trnae-cuc-372 NA coding upstream 1057 3289684 ~ 3289755 (+)
trnae-cuc-371 NA coding upstream 2267 3288474 ~ 3288545 (+)
trnae-cuc-370 NA coding upstream 3296 3287445 ~ 3287516 (+)
LOC110513657 LOC106592508 coding downstream 8032 3303563 ~ 3308228 (+)
LOC110534750 ma7d1 coding downstream 14162 3309693 ~ 3314825 (+)
LOC110534763 LOC106610379 coding downstream 19337 3314868 ~ 3317441 (+)
LOC110534757 LOC106602178 coding downstream 29885 3325416 ~ 3329282 (+)
LOC110534760 LOC106610383 coding downstream 37051 3332582 ~ 3344863 (+)
G1583783 NA non-coding upstream 346 3290257 ~ 3290466 (+)
G1583686 NA non-coding upstream 97583 3191892 ~ 3193229 (+)
G1583675 NA non-coding upstream 136610 3153879 ~ 3154202 (+)
LOC110510463 LOC106590758 non-coding upstream 170918 3105399 ~ 3128798 (+)
G1583658 NA non-coding upstream 176548 3113982 ~ 3114264 (+)
G1583811 NA non-coding downstream 28051 3323582 ~ 3372508 (+)
LOC118941411 NA non-coding downstream 56297 3349758 ~ 3355397 (+)
G1583817 NA non-coding downstream 67120 3362651 ~ 3363004 (+)
G1583840 NA non-coding downstream 82545 3378076 ~ 3378327 (+)
LOC110517772 LOC106610548 other upstream 219169 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 400006 2888963 ~ 3003056 (+)
G1583215 NA other upstream 475518 2765199 ~ 2815294 (+)
LOC110518136 LOC106592283 other upstream 487381 2770293 ~ 2811692 (+)
G1583003 NA other upstream 1089939 2198928 ~ 2200873 (+)
LOC110534752 LOC106602173 other downstream 137185 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 188115 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 322307 3609578 ~ 3622792 (+)
G1583951 NA other downstream 345118 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 392637 3687991 ~ 3692012 (+)

Expression


Co-expression Network