LOC110534750 (ma7d1)


Basic Information

Item Value
gene id LOC110534750
gene name ma7d1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3309693 ~ 3314825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953933.1
TGAACGCTGATCGGATGCGTGCGCAAAGACACAGTTATTAAAGATGGCGGCGCATTGACAACAATCCAGGTATTCTTACAAATATTACTACTTCGTGAACAAGCTGGGGACAAAATCGTTTATTAGACGTTTTGAATTATTTTGAATCGTCATAGCTATCAGTAGTTGTGACCAGGTTTCACAAAAACAAGTGTTTAAAATGTCGGTAACGCGTGTTTTGCATCAACGGATAAGCTCTGTCATGGGCATACTAGCCTCAGCTGCTGTGACCGAGATTTGCAAGTTAGTGGACGATTGCTGTGGAGCGTTACGTGTAGAAGTCTCTCAAAGCAAGGAGCAAATCCTATTGCTAGAGAAGCAACTCAGCCTGGCGGAGTCGAGGTACAAGTCGGTGAGTGGCAAAGGGCTGACGCCTGTCACCGGCGACTCACCAATAATCAACAGTTCGTCGGGCGATTCACCCGCGGCGAATGCCGATGATGCGGACGAAGACGAAGTTAACACTCTTGAGGTGGACGGTGTCAATGGCAATCAGCACGCTCTGTGGAAAGAGGTATCCACAGCACCAACTGATGAGGCTGGGCCCCTCACACTGACCCCTGGCCCCATAGTCAGTTCCAATGAGAACACTGGGCCCCCCGCAATGACCCCTGACCCCATAGTCAGTTCCAGTGACATACCCAGAAAGCAACATATTACCAGTTTCCGAGTTGGTGAAACTCCCAAGATACAACCGTGCACCACGTGCTGCTCCCTCTACCACTGCCCCTTCTGCCGACCGTCTGCGTTCAAACCCAACGAGTTACACCGGATCATCCCACACATCCAGAGCCACCTGAAAAGTGCAGTTCAGAATGACGAGTACATCGTCTACAACTGCAAACTGACGTGCAGAGACTACCCTCACTACCACTGCAGCTATTGTGACCATGTACTCTGCAGAAAAGCGTTGTTTATTGAACATTTCAGAGCTTGCAGAAAGCGGAACGGGACTCAAGGACCTGCCCGTGTCCCAGCTCAATCTGTTGCTCCGCCCCTCCAGCAACATCCCTCTCCAGCCCAGAGACTTCTCGCCCATGCAACATCCACACCTGCCCGTGTCCAAGCTCAATCTCCATCTGTTGCTCCGCCCCTCCAGCAACATCCCTCTCCAGCCCAGAGACCTCTCGCCCATGCAACATCCACACCTGTCCTGCCTCTCACATCTATACCTGCTGTCCCTTCCAGCTccagacctgccacccctccGAGCTTACCAGTCGCTCTTCAAACTctaaacacagacacacctccAATGGAAAAACCAGATGCTTCTGCCAGTCACAATCCGGTCACACGCCAGGATTCGGAACCCTCCTCGCCCGAAGTGTACAGCTGCCCTCCGACGCCGCAGATTGAGACCGAGAGACCGCCAAGACCTTCCCAAAGGGACGCAGTTCCTGTACAGACTCAGTGTGACCACTGCGGCATCATCCTAAACAAGAAGAACTTCAAGGTTCACATGAAGAGGAAACACCACAAAGAGTACGTCGCTGCAGAGAACGAGGAGGCCCTGAGGAGATACCTGGCCGAATCCAAGATGGCCGTGCCACCCTGGTGCCGTGCCACCAAGGTCCAGTGCGATCTCTGCGGAATCAGGCTGAACAAGAAGAATTTCAAGAACCACATGAAGAGGAAACACAAGGTGAACGTGACGGCGTCGGCCTTCCAGGAAGCTTTCGACCGGTGCCTGGGCGAACAAGGCCTGTTGGTGGTCGAGAGCTCGTTGCCCGGCTACACTTATACTAGGACGCAGGAAAGAGGAAGGCGGAGGGAAGAGCGGGACGATGACCTCTTTCCGGACATCGACATGGAAGAAGAACAAAGCGTCAGGTTCCCGGACGCCGGCGCACTACTGGCCCAGGAAACGGACCTGCCGACCCAGCAGTTGCAAGGAGAGAGAGTGCTGACTGGAATGAATCCTCAGAGGTACCATGGTCTGGGGAAACCTCATCTCCTGGAGCTTCCTCTTGAGTCGCTGGTGTGGATCTTCCGGGACGTACTGCGTGTGGATGGAAAGAGAGGCTACTGGAACCTGTCTCTGGTCTGCAGAACCTTCAATGCCATCCTGACAAATGAAATCATCAGGAAGTACTCCACGGGGAAGAGATCTGATCCTGAACCCCAGTAGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGCTTACAGGTTACTGTGAATGACATAATGTGCTAATATGCTCACTGCATACACACCTATTACCAATGTTATTACtaccaatgtttttttatttttttatttacaacgttctcatttattgtaaaaacaaaaagCAAAATGTTATCTAGTTGTTTTGCTATCGCTGAGGACTATCTGAAATCCCATTGGCTATTTATTCATTCTATATTCAGATTTTGTATATATTTCTACTGTTACATTGTTCAGAGTTAGAGTGCATTCTCAGTGTGGTGCTTCAGTTAGTTTGGAGACTACTAACCCTTAGCCTACTCAATTAAATTACTTTTAATTGAAGGaatgtatttattcctttataatTCAGTTGTATTctgattttgtatttttgtacttGAACTAAATAGTAAAATCTTTTTTGGA
>TU1813223
TCACTGATTCAATACAACTCAGAGATCAGTACTCTAGAACCTAACTATTCACTAACTTCTTCTTTATTCCCAGAATCCTCAGAGGTACCATGGTCTGGGGAAACCTCATCTCCTGGAGCTTCCTCTTGAGTCGCTGGTGTGGATCTTCCGGGACGTACTGCGTGTGGATGGAAAGAGAGGCTACTGGAACCTGTCTCTGGTCTGCAGAACCTTCAATGCCATCCTGACAAATGAAATCATCAGGAAGTACTCCACGGGGAAGAGATCTGATCCTGAACCCCAGTAGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGCTTACAGGTTACTGTGAATGACATAATGTGCTAATATGCTCACTGCATACACACCTATTACCAATGTTATTACtaccaatgtttttttatttttttatttacaacgttctcatttattgtaaaaacaaaaagCAAAATGTTATCTAGTTGTTTTGCTATCGCTGAGGACTATCTGAAATCCCATTGGCTATTTATTCATTCTATATTCAGATTTTGTATATATTTCTACTGTTACATTGTTCAGAGTTAGAGTGCATTCTCAGTGTGGTGCTTCAGTTAGTTTGGAGACTACTAACCCTTAGCCTACTCAATTAAATTACTTTTAATTGAAGGaatgtatttattcctttataatTCAGTTGTATTctgattttgtatttttgtacttGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953933.1 False 2617 mRNA 0.49 7 3309693 3314825
TU1813223 True 709 lncRNA 0.38 3 3313059 3314801

Neighbor

gene id symbol gene type direction distance location
LOC110513657 LOC106592508 coding upstream 1465 3303563 ~ 3308228 (+)
LOC110519316 LOC106610378 coding upstream 14162 3290812 ~ 3295531 (+)
trnae-cuc-374 NA coding upstream 19576 3290046 ~ 3290117 (+)
trnae-cuc-373 NA coding upstream 19757 3289865 ~ 3289936 (+)
trnae-cuc-372 NA coding upstream 19938 3289684 ~ 3289755 (+)
LOC110534763 LOC106610379 coding downstream 43 3314868 ~ 3317441 (+)
LOC110534757 LOC106602178 coding downstream 10591 3325416 ~ 3329282 (+)
LOC110534760 LOC106610383 coding downstream 17757 3332582 ~ 3344863 (+)
LOC110534762 LOC106602177 coding downstream 31523 3346348 ~ 3348947 (+)
LOC118941411 NA coding downstream 34933 3349758 ~ 3355397 (+)
G1583783 NA non-coding upstream 19227 3290257 ~ 3290466 (+)
G1583686 NA non-coding upstream 116464 3191892 ~ 3193229 (+)
G1583675 NA non-coding upstream 155491 3153879 ~ 3154202 (+)
LOC110510463 LOC106590758 non-coding upstream 189799 3105399 ~ 3128798 (+)
G1583658 NA non-coding upstream 195429 3113982 ~ 3114264 (+)
G1583811 NA non-coding downstream 8757 3323582 ~ 3372508 (+)
G1583817 NA non-coding downstream 47826 3362651 ~ 3363004 (+)
G1583840 NA non-coding downstream 63251 3378076 ~ 3378327 (+)
G1583841 NA non-coding downstream 63547 3378372 ~ 3378600 (+)
LOC110517772 LOC106610548 other upstream 238050 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 418887 2888963 ~ 3003056 (+)
G1583215 NA other upstream 494399 2765199 ~ 2815294 (+)
LOC110518136 LOC106592283 other upstream 506262 2770293 ~ 2811692 (+)
G1583003 NA other upstream 1108820 2198928 ~ 2200873 (+)
LOC110534752 LOC106602173 other downstream 117891 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 168821 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 303013 3609578 ~ 3622792 (+)
G1583951 NA other downstream 325824 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 373343 3687991 ~ 3692012 (+)

Expression


Co-expression Network